Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02320 and BPHYT_RS02325 are separated by 183 nucleotides BPHYT_RS02325 and BPHYT_RS02330 are separated by 281 nucleotides
BPHYT_RS02320: BPHYT_RS02320 - 3-oxoadipate enol-lactonase, at 531,679 to 532,467
_RS02320
BPHYT_RS02325: BPHYT_RS02325 - hypothetical protein, at 532,651 to 533,958
_RS02325
BPHYT_RS02330: BPHYT_RS02330 - IclR family transcriptional regulator, at 534,240 to 535,142
_RS02330
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 531.680 kb on + strand at 531.796 kb on + strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.879 kb on + strand, within BPHYT_RS02320 at 531.880 kb on - strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.923 kb on + strand, within BPHYT_RS02320 at 531.924 kb on - strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 532.206 kb on + strand, within BPHYT_RS02320 at 532.207 kb on - strand, within BPHYT_RS02320 at 532.314 kb on - strand, within BPHYT_RS02320 at 532.329 kb on - strand, within BPHYT_RS02320 at 532.433 kb on + strand at 532.434 kb on - strand at 532.434 kb on - strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.551 kb on + strand at 532.552 kb on - strand at 532.674 kb on + strand at 532.737 kb on + strand at 533.058 kb on + strand, within BPHYT_RS02325 at 533.100 kb on + strand, within BPHYT_RS02325 at 533.101 kb on - strand, within BPHYT_RS02325 at 533.103 kb on - strand, within BPHYT_RS02325 at 533.103 kb on - strand, within BPHYT_RS02325 at 533.122 kb on + strand, within BPHYT_RS02325 at 533.122 kb on + strand, within BPHYT_RS02325 at 533.182 kb on + strand, within BPHYT_RS02325 at 533.322 kb on - strand, within BPHYT_RS02325 at 533.369 kb on + strand, within BPHYT_RS02325 at 533.370 kb on - strand, within BPHYT_RS02325 at 533.427 kb on - strand, within BPHYT_RS02325 at 533.427 kb on - strand, within BPHYT_RS02325 at 533.745 kb on + strand, within BPHYT_RS02325 at 533.746 kb on - strand, within BPHYT_RS02325 at 533.746 kb on - strand, within BPHYT_RS02325 at 534.048 kb on + strand at 534.049 kb on - strand at 534.065 kb on - strand at 534.263 kb on + strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.265 kb on + strand at 534.266 kb on - strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.278 kb on - strand at 534.335 kb on + strand, within BPHYT_RS02330 at 534.586 kb on + strand, within BPHYT_RS02330 at 534.587 kb on - strand, within BPHYT_RS02330 at 534.895 kb on + strand, within BPHYT_RS02330 at 534.896 kb on - strand, within BPHYT_RS02330
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 531,680 + -2.3 531,796 + BPHYT_RS02320 0.15 -0.3 531,797 - BPHYT_RS02320 0.15 -1.1 531,797 - BPHYT_RS02320 0.15 +0.9 531,807 + BPHYT_RS02320 0.16 -0.4 531,807 + BPHYT_RS02320 0.16 -1.8 531,808 - BPHYT_RS02320 0.16 +1.4 531,808 - BPHYT_RS02320 0.16 +0.4 531,808 - BPHYT_RS02320 0.16 +0.4 531,879 + BPHYT_RS02320 0.25 -0.6 531,880 - BPHYT_RS02320 0.25 +1.6 531,886 + BPHYT_RS02320 0.26 -0.7 531,886 + BPHYT_RS02320 0.26 +0.2 531,886 + BPHYT_RS02320 0.26 +0.9 531,923 + BPHYT_RS02320 0.31 +0.2 531,924 - BPHYT_RS02320 0.31 +1.5 531,949 + BPHYT_RS02320 0.34 +0.9 531,949 + BPHYT_RS02320 0.34 +1.0 532,206 + BPHYT_RS02320 0.67 +0.1 532,207 - BPHYT_RS02320 0.67 +2.0 532,314 - BPHYT_RS02320 0.80 -1.9 532,329 - BPHYT_RS02320 0.82 +0.1 532,433 + +0.2 532,434 - +0.1 532,434 - +0.1 532,549 + -0.5 532,549 + -0.2 532,549 + +1.2 532,550 - +1.2 532,550 - +0.2 532,550 - -0.5 532,551 + -1.8 532,552 - -2.7 532,674 + -0.5 532,737 + +0.0 533,058 + BPHYT_RS02325 0.31 -1.1 533,100 + BPHYT_RS02325 0.34 +0.1 533,101 - BPHYT_RS02325 0.34 +2.1 533,103 - BPHYT_RS02325 0.35 +0.3 533,103 - BPHYT_RS02325 0.35 -0.3 533,122 + BPHYT_RS02325 0.36 -0.6 533,122 + BPHYT_RS02325 0.36 -1.2 533,182 + BPHYT_RS02325 0.41 +0.8 533,322 - BPHYT_RS02325 0.51 +0.1 533,369 + BPHYT_RS02325 0.55 +3.4 533,370 - BPHYT_RS02325 0.55 +0.6 533,427 - BPHYT_RS02325 0.59 +0.4 533,427 - BPHYT_RS02325 0.59 +1.5 533,745 + BPHYT_RS02325 0.84 +0.1 533,746 - BPHYT_RS02325 0.84 -0.9 533,746 - BPHYT_RS02325 0.84 -0.2 534,048 + +0.6 534,049 - -0.9 534,065 - +0.1 534,263 + -0.2 534,264 - +0.2 534,264 - -0.0 534,264 - +0.6 534,265 + -1.2 534,266 - +0.3 534,277 + -0.3 534,277 + +1.0 534,278 - -0.7 534,335 + BPHYT_RS02330 0.11 -2.4 534,586 + BPHYT_RS02330 0.38 +0.2 534,587 - BPHYT_RS02330 0.38 +1.5 534,895 + BPHYT_RS02330 0.73 -0.6 534,896 - BPHYT_RS02330 0.73 -3.0
Or see this region's nucleotide sequence