Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02305

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02295 and BPHYT_RS02300 are separated by 142 nucleotidesBPHYT_RS02300 and BPHYT_RS02305 are separated by 159 nucleotidesBPHYT_RS02305 and BPHYT_RS02310 are separated by 95 nucleotides BPHYT_RS02295: BPHYT_RS02295 - hypothetical protein, at 526,304 to 526,630 _RS02295 BPHYT_RS02300: BPHYT_RS02300 - acid shock protein, at 526,773 to 526,982 _RS02300 BPHYT_RS02305: BPHYT_RS02305 - methionine synthase, at 527,142 to 529,850 _RS02305 BPHYT_RS02310: BPHYT_RS02310 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 529,946 to 531,016 _RS02310 Position (kb) 527 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 526.172 kb on + strandat 526.172 kb on + strandat 526.172 kb on + strandat 526.172 kb on + strandat 526.172 kb on + strandat 526.173 kb on - strandat 526.173 kb on - strandat 526.173 kb on - strandat 526.173 kb on - strandat 526.175 kb on + strandat 526.175 kb on + strandat 526.175 kb on + strandat 526.175 kb on + strandat 526.175 kb on + strandat 526.175 kb on + strandat 526.176 kb on - strandat 526.176 kb on - strandat 526.313 kb on - strandat 526.313 kb on - strandat 526.313 kb on - strandat 526.367 kb on + strand, within BPHYT_RS02295at 526.367 kb on + strand, within BPHYT_RS02295at 526.367 kb on + strand, within BPHYT_RS02295at 526.368 kb on - strand, within BPHYT_RS02295at 526.719 kb on + strandat 526.720 kb on - strandat 526.775 kb on - strandat 526.877 kb on - strand, within BPHYT_RS02300at 527.011 kb on - strandat 527.011 kb on - strandat 527.063 kb on - strandat 527.091 kb on + strandat 527.143 kb on + strandat 527.203 kb on + strandat 527.204 kb on - strandat 527.245 kb on + strandat 527.245 kb on + strandat 527.246 kb on - strandat 527.246 kb on - strandat 527.246 kb on - strandat 527.246 kb on - strandat 527.419 kb on + strand, within BPHYT_RS02305at 527.419 kb on + strand, within BPHYT_RS02305at 527.560 kb on + strand, within BPHYT_RS02305at 527.638 kb on + strand, within BPHYT_RS02305at 527.639 kb on - strand, within BPHYT_RS02305at 527.782 kb on + strand, within BPHYT_RS02305at 528.190 kb on + strand, within BPHYT_RS02305at 528.191 kb on - strand, within BPHYT_RS02305at 528.191 kb on - strand, within BPHYT_RS02305at 528.259 kb on + strand, within BPHYT_RS02305at 528.259 kb on + strand, within BPHYT_RS02305at 528.277 kb on + strand, within BPHYT_RS02305at 528.277 kb on + strand, within BPHYT_RS02305at 528.361 kb on + strand, within BPHYT_RS02305at 528.391 kb on + strand, within BPHYT_RS02305at 528.519 kb on - strand, within BPHYT_RS02305at 528.655 kb on + strand, within BPHYT_RS02305at 529.048 kb on + strand, within BPHYT_RS02305at 529.049 kb on - strand, within BPHYT_RS02305at 529.109 kb on - strand, within BPHYT_RS02305at 529.386 kb on - strand, within BPHYT_RS02305at 529.587 kb on - strandat 529.864 kb on + strandat 529.864 kb on + strandat 529.865 kb on - strandat 529.865 kb on - strandat 529.865 kb on - strandat 529.886 kb on - strandat 530.020 kb on + strandat 530.021 kb on - strandat 530.060 kb on + strand, within BPHYT_RS02310at 530.061 kb on - strand, within BPHYT_RS02310at 530.101 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.175 kb on + strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.176 kb on - strand, within BPHYT_RS02310at 530.207 kb on - strand, within BPHYT_RS02310at 530.207 kb on - strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.208 kb on + strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.209 kb on - strand, within BPHYT_RS02310at 530.487 kb on + strand, within BPHYT_RS02310at 530.487 kb on + strand, within BPHYT_RS02310at 530.491 kb on - strand, within BPHYT_RS02310at 530.554 kb on + strand, within BPHYT_RS02310at 530.619 kb on + strand, within BPHYT_RS02310

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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526,172 + -0.2
526,172 + -0.5
526,172 + +0.0
526,172 + +1.3
526,172 + +0.4
526,173 - -1.8
526,173 - +0.0
526,173 - -0.1
526,173 - -0.0
526,175 + +0.1
526,175 + -0.0
526,175 + +0.7
526,175 + +2.1
526,175 + +0.8
526,175 + +0.1
526,176 - +0.4
526,176 - +0.5
526,313 - +0.7
526,313 - -0.7
526,313 - +1.1
526,367 + BPHYT_RS02295 0.19 +0.3
526,367 + BPHYT_RS02295 0.19 +2.0
526,367 + BPHYT_RS02295 0.19 +0.4
526,368 - BPHYT_RS02295 0.20 +1.7
526,719 + +0.3
526,720 - -0.2
526,775 - -0.1
526,877 - BPHYT_RS02300 0.50 -0.3
527,011 - +0.2
527,011 - +1.8
527,063 - -3.0
527,091 + +0.5
527,143 + +0.2
527,203 + -0.9
527,204 - +0.4
527,245 + -0.1
527,245 + +0.5
527,246 - -0.2
527,246 - -2.3
527,246 - -0.2
527,246 - -1.2
527,419 + BPHYT_RS02305 0.10 +3.1
527,419 + BPHYT_RS02305 0.10 -1.0
527,560 + BPHYT_RS02305 0.15 -0.6
527,638 + BPHYT_RS02305 0.18 -0.2
527,639 - BPHYT_RS02305 0.18 +0.1
527,782 + BPHYT_RS02305 0.24 -0.7
528,190 + BPHYT_RS02305 0.39 -0.6
528,191 - BPHYT_RS02305 0.39 -0.1
528,191 - BPHYT_RS02305 0.39 -0.5
528,259 + BPHYT_RS02305 0.41 +1.1
528,259 + BPHYT_RS02305 0.41 -1.7
528,277 + BPHYT_RS02305 0.42 +0.2
528,277 + BPHYT_RS02305 0.42 -1.5
528,361 + BPHYT_RS02305 0.45 -2.9
528,391 + BPHYT_RS02305 0.46 -1.0
528,519 - BPHYT_RS02305 0.51 +0.7
528,655 + BPHYT_RS02305 0.56 -0.2
529,048 + BPHYT_RS02305 0.70 +0.9
529,049 - BPHYT_RS02305 0.70 +1.1
529,109 - BPHYT_RS02305 0.73 +0.6
529,386 - BPHYT_RS02305 0.83 -0.2
529,587 - +1.0
529,864 + +0.2
529,864 + -0.1
529,865 - +0.7
529,865 - -0.6
529,865 - -1.3
529,886 - +4.9
530,020 + +0.1
530,021 - -0.7
530,060 + BPHYT_RS02310 0.11 -0.1
530,061 - BPHYT_RS02310 0.11 +1.3
530,101 + BPHYT_RS02310 0.14 -1.4
530,175 + BPHYT_RS02310 0.21 +1.7
530,175 + BPHYT_RS02310 0.21 -2.1
530,175 + BPHYT_RS02310 0.21 -1.1
530,175 + BPHYT_RS02310 0.21 -0.4
530,175 + BPHYT_RS02310 0.21 -0.8
530,175 + BPHYT_RS02310 0.21 -0.3
530,175 + BPHYT_RS02310 0.21 +0.2
530,176 - BPHYT_RS02310 0.21 +0.4
530,176 - BPHYT_RS02310 0.21 -1.1
530,176 - BPHYT_RS02310 0.21 -0.5
530,176 - BPHYT_RS02310 0.21 -0.4
530,176 - BPHYT_RS02310 0.21 +0.2
530,207 - BPHYT_RS02310 0.24 -0.1
530,207 - BPHYT_RS02310 0.24 +0.3
530,208 + BPHYT_RS02310 0.24 -0.2
530,208 + BPHYT_RS02310 0.24 +0.6
530,208 + BPHYT_RS02310 0.24 +0.6
530,208 + BPHYT_RS02310 0.24 -0.5
530,209 - BPHYT_RS02310 0.25 +0.2
530,209 - BPHYT_RS02310 0.25 -1.4
530,209 - BPHYT_RS02310 0.25 -2.1
530,209 - BPHYT_RS02310 0.25 -0.5
530,209 - BPHYT_RS02310 0.25 -0.3
530,487 + BPHYT_RS02310 0.51 -0.2
530,487 + BPHYT_RS02310 0.51 +0.4
530,491 - BPHYT_RS02310 0.51 -1.7
530,554 + BPHYT_RS02310 0.57 -1.8
530,619 + BPHYT_RS02310 0.63 -1.6

Or see this region's nucleotide sequence