Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00525 and BPHYT_RS00530 are separated by 598 nucleotides BPHYT_RS00530 and BPHYT_RS00535 are separated by 50 nucleotides
BPHYT_RS00525: BPHYT_RS00525 - aldehyde dismutase, at 127,223 to 128,437
_RS00525
BPHYT_RS00530: BPHYT_RS00530 - hypothetical protein, at 129,036 to 129,230
_RS00530
BPHYT_RS00535: BPHYT_RS00535 - AraC family transcriptional regulator, at 129,281 to 130,255
_RS00535
Position (kb) 129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.089 kb on + strand, within BPHYT_RS00525 at 128.089 kb on + strand, within BPHYT_RS00525 at 128.272 kb on - strand, within BPHYT_RS00525 at 128.465 kb on + strand at 128.524 kb on - strand at 128.721 kb on - strand at 128.946 kb on + strand at 128.947 kb on - strand at 129.098 kb on + strand, within BPHYT_RS00530 at 129.147 kb on - strand, within BPHYT_RS00530 at 129.233 kb on + strand at 129.233 kb on + strand at 129.234 kb on - strand at 129.252 kb on + strand at 129.252 kb on + strand at 129.253 kb on - strand at 129.298 kb on + strand at 129.307 kb on + strand at 129.351 kb on - strand at 129.351 kb on - strand at 129.351 kb on - strand at 129.471 kb on + strand, within BPHYT_RS00535 at 129.609 kb on - strand, within BPHYT_RS00535 at 129.751 kb on + strand, within BPHYT_RS00535 at 129.752 kb on - strand, within BPHYT_RS00535 at 129.771 kb on - strand, within BPHYT_RS00535 at 129.771 kb on - strand, within BPHYT_RS00535 at 129.899 kb on + strand, within BPHYT_RS00535 at 129.900 kb on - strand, within BPHYT_RS00535 at 130.111 kb on + strand, within BPHYT_RS00535 at 130.111 kb on + strand, within BPHYT_RS00535 at 130.135 kb on + strand, within BPHYT_RS00535 at 130.136 kb on - strand, within BPHYT_RS00535 at 130.188 kb on + strand at 130.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 128,089 + BPHYT_RS00525 0.71 -0.3 128,089 + BPHYT_RS00525 0.71 +0.6 128,272 - BPHYT_RS00525 0.86 +0.8 128,465 + -0.2 128,524 - +0.3 128,721 - -1.4 128,946 + -0.4 128,947 - -0.4 129,098 + BPHYT_RS00530 0.32 +0.3 129,147 - BPHYT_RS00530 0.57 +1.8 129,233 + -1.9 129,233 + -0.1 129,234 - -1.6 129,252 + -0.6 129,252 + +0.1 129,253 - +0.7 129,298 + -0.9 129,307 + +0.2 129,351 - +0.0 129,351 - +0.2 129,351 - -2.4 129,471 + BPHYT_RS00535 0.19 -0.6 129,609 - BPHYT_RS00535 0.34 -0.3 129,751 + BPHYT_RS00535 0.48 -0.4 129,752 - BPHYT_RS00535 0.48 -0.8 129,771 - BPHYT_RS00535 0.50 +0.6 129,771 - BPHYT_RS00535 0.50 +0.5 129,899 + BPHYT_RS00535 0.63 -0.1 129,900 - BPHYT_RS00535 0.63 -0.3 130,111 + BPHYT_RS00535 0.85 -0.9 130,111 + BPHYT_RS00535 0.85 +1.2 130,135 + BPHYT_RS00535 0.88 -0.4 130,136 - BPHYT_RS00535 0.88 +0.4 130,188 + -0.0 130,189 - -3.0
Or see this region's nucleotide sequence