Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00390 and BPHYT_RS00395 are separated by 259 nucleotides BPHYT_RS00395 and BPHYT_RS00400 are separated by 510 nucleotides BPHYT_RS00400 and BPHYT_RS00405 are separated by 17 nucleotides
BPHYT_RS00390: BPHYT_RS00390 - AraC family transcriptional regulator, at 97,797 to 98,831
_RS00390
BPHYT_RS00395: BPHYT_RS00395 - aldehyde dehydrogenase, at 99,091 to 100,518
_RS00395
BPHYT_RS00400: BPHYT_RS00400 - hypothetical protein, at 101,029 to 101,316
_RS00400
BPHYT_RS00405: BPHYT_RS00405 - hypothetical protein, at 101,334 to 101,687
_RS00405
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1 at 98.176 kb on - strand, within BPHYT_RS00390 at 98.235 kb on + strand, within BPHYT_RS00390 at 98.409 kb on + strand, within BPHYT_RS00390 at 98.434 kb on + strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.659 kb on - strand, within BPHYT_RS00390 at 98.990 kb on + strand at 98.991 kb on - strand at 99.014 kb on - strand at 99.069 kb on + strand at 99.070 kb on - strand at 99.099 kb on + strand at 99.351 kb on - strand, within BPHYT_RS00395 at 99.351 kb on - strand, within BPHYT_RS00395 at 99.360 kb on + strand, within BPHYT_RS00395 at 99.393 kb on - strand at 99.447 kb on + strand, within BPHYT_RS00395 at 99.452 kb on - strand, within BPHYT_RS00395 at 99.859 kb on + strand, within BPHYT_RS00395 at 100.250 kb on - strand, within BPHYT_RS00395 at 100.461 kb on - strand at 100.579 kb on - strand at 100.681 kb on - strand at 100.985 kb on - strand at 101.083 kb on - strand, within BPHYT_RS00400 at 101.132 kb on + strand, within BPHYT_RS00400 at 101.133 kb on - strand, within BPHYT_RS00400 at 101.177 kb on - strand, within BPHYT_RS00400 at 101.308 kb on - strand at 101.339 kb on + strand at 101.340 kb on - strand at 101.340 kb on - strand at 101.371 kb on + strand, within BPHYT_RS00405 at 101.372 kb on - strand, within BPHYT_RS00405 at 101.372 kb on - strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.374 kb on - strand, within BPHYT_RS00405 at 101.374 kb on - strand, within BPHYT_RS00405 at 101.374 kb on - strand, within BPHYT_RS00405 at 101.513 kb on + strand, within BPHYT_RS00405 at 101.513 kb on + strand, within BPHYT_RS00405 at 101.514 kb on - strand, within BPHYT_RS00405
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 98,176 - BPHYT_RS00390 0.37 -1.3 98,235 + BPHYT_RS00390 0.42 -1.5 98,409 + BPHYT_RS00390 0.59 +1.7 98,434 + BPHYT_RS00390 0.62 +0.5 98,498 - BPHYT_RS00390 0.68 +0.0 98,498 - BPHYT_RS00390 0.68 +1.2 98,659 - BPHYT_RS00390 0.83 +1.6 98,990 + -1.0 98,991 - -1.7 99,014 - +0.7 99,069 + +0.6 99,070 - +0.6 99,099 + -0.2 99,351 - BPHYT_RS00395 0.18 -0.2 99,351 - BPHYT_RS00395 0.18 -1.5 99,360 + BPHYT_RS00395 0.19 +0.7 99,393 - -0.0 99,447 + BPHYT_RS00395 0.25 +0.0 99,452 - BPHYT_RS00395 0.25 +0.2 99,859 + BPHYT_RS00395 0.54 -2.0 100,250 - BPHYT_RS00395 0.81 -0.8 100,461 - +0.1 100,579 - -0.5 100,681 - +0.2 100,985 - -0.3 101,083 - BPHYT_RS00400 0.19 -0.1 101,132 + BPHYT_RS00400 0.36 -0.2 101,133 - BPHYT_RS00400 0.36 -0.1 101,177 - BPHYT_RS00400 0.51 -0.4 101,308 - +0.1 101,339 + -1.3 101,340 - -0.2 101,340 - -0.3 101,371 + BPHYT_RS00405 0.10 -0.8 101,372 - BPHYT_RS00405 0.11 -0.1 101,372 - BPHYT_RS00405 0.11 -0.1 101,373 + BPHYT_RS00405 0.11 +0.7 101,373 + BPHYT_RS00405 0.11 -0.4 101,373 + BPHYT_RS00405 0.11 +0.4 101,373 + BPHYT_RS00405 0.11 -0.0 101,374 - BPHYT_RS00405 0.11 -0.4 101,374 - BPHYT_RS00405 0.11 +1.7 101,374 - BPHYT_RS00405 0.11 -2.1 101,513 + BPHYT_RS00405 0.51 +0.1 101,513 + BPHYT_RS00405 0.51 -0.1 101,514 - BPHYT_RS00405 0.51 -0.9
Or see this region's nucleotide sequence