Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29500

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29490 and BPHYT_RS29500 are separated by 605 nucleotidesBPHYT_RS29500 and BPHYT_RS29505 are separated by 11 nucleotidesBPHYT_RS29505 and BPHYT_RS29510 are separated by 339 nucleotides BPHYT_RS29490: BPHYT_RS29490 - phosphonate metabolism protein PhnM, at 2,167,927 to 2,169,060 _RS29490 BPHYT_RS29500: BPHYT_RS29500 - hypothetical protein, at 2,169,666 to 2,170,019 _RS29500 BPHYT_RS29505: BPHYT_RS29505 - hypothetical protein, at 2,170,031 to 2,170,396 _RS29505 BPHYT_RS29510: BPHYT_RS29510 - deoxyuridine 5`-triphosphate nucleotidohydrolase, at 2,170,736 to 2,172,550 _RS29510 Position (kb) 2169 2170 2171Strain fitness (log2 ratio) -1 0 1at 2169.279 kb on - strandat 2169.325 kb on + strandat 2169.713 kb on - strand, within BPHYT_RS29500at 2169.887 kb on - strand, within BPHYT_RS29500at 2170.423 kb on - strandat 2170.846 kb on + strandat 2170.849 kb on - strandat 2170.878 kb on + strandat 2170.878 kb on + strandat 2170.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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2,169,279 - -0.8
2,169,325 + +0.8
2,169,713 - BPHYT_RS29500 0.13 +0.0
2,169,887 - BPHYT_RS29500 0.62 +1.4
2,170,423 - +0.6
2,170,846 + -0.4
2,170,849 - -0.3
2,170,878 + -0.6
2,170,878 + -0.4
2,170,879 - +0.1

Or see this region's nucleotide sequence