Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20595 and BPHYT_RS20600 are separated by 85 nucleotides BPHYT_RS20600 and BPHYT_RS20605 are separated by 279 nucleotides BPHYT_RS20605 and BPHYT_RS20610 are separated by 39 nucleotides
BPHYT_RS20595: BPHYT_RS20595 - hypothetical protein, at 180,638 to 180,910
_RS20595
BPHYT_RS20600: BPHYT_RS20600 - peroxiredoxin, at 180,996 to 181,421
_RS20600
BPHYT_RS20605: BPHYT_RS20605 - LysR family transcriptional regulator, at 181,701 to 182,837
_RS20605
BPHYT_RS20610: BPHYT_RS20610 - LysR family transcriptional regulator, at 182,877 to 183,788
_RS20610
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1
2
3 at 180.721 kb on - strand, within BPHYT_RS20595 at 180.816 kb on + strand, within BPHYT_RS20595 at 181.012 kb on - strand at 181.240 kb on + strand, within BPHYT_RS20600 at 181.240 kb on + strand, within BPHYT_RS20600 at 181.240 kb on + strand, within BPHYT_RS20600 at 181.241 kb on - strand, within BPHYT_RS20600 at 181.652 kb on - strand at 181.656 kb on + strand at 181.657 kb on - strand at 181.657 kb on - strand at 181.664 kb on - strand at 181.683 kb on + strand at 181.684 kb on - strand at 181.805 kb on - strand at 182.204 kb on - strand, within BPHYT_RS20605 at 182.227 kb on - strand, within BPHYT_RS20605 at 182.496 kb on + strand, within BPHYT_RS20605 at 182.496 kb on + strand, within BPHYT_RS20605 at 182.497 kb on - strand, within BPHYT_RS20605 at 182.652 kb on + strand, within BPHYT_RS20605 at 182.878 kb on + strand at 182.879 kb on - strand at 183.043 kb on + strand, within BPHYT_RS20610 at 183.112 kb on + strand, within BPHYT_RS20610 at 183.113 kb on - strand, within BPHYT_RS20610 at 183.197 kb on - strand, within BPHYT_RS20610 at 183.466 kb on + strand, within BPHYT_RS20610 at 183.467 kb on - strand, within BPHYT_RS20610 at 183.578 kb on - strand, within BPHYT_RS20610 at 183.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 180,721 - BPHYT_RS20595 0.30 +0.9 180,816 + BPHYT_RS20595 0.65 -0.0 181,012 - -1.0 181,240 + BPHYT_RS20600 0.57 -0.7 181,240 + BPHYT_RS20600 0.57 +0.7 181,240 + BPHYT_RS20600 0.57 +0.5 181,241 - BPHYT_RS20600 0.58 +0.6 181,652 - -0.0 181,656 + -0.1 181,657 - -0.5 181,657 - -0.1 181,664 - +1.0 181,683 + -0.2 181,684 - +0.0 181,805 - -0.4 182,204 - BPHYT_RS20605 0.44 +2.9 182,227 - BPHYT_RS20605 0.46 +0.2 182,496 + BPHYT_RS20605 0.70 +2.5 182,496 + BPHYT_RS20605 0.70 +0.5 182,497 - BPHYT_RS20605 0.70 +0.3 182,652 + BPHYT_RS20605 0.84 +0.0 182,878 + +0.1 182,879 - +0.2 183,043 + BPHYT_RS20610 0.18 +0.3 183,112 + BPHYT_RS20610 0.26 +0.0 183,113 - BPHYT_RS20610 0.26 -0.3 183,197 - BPHYT_RS20610 0.35 +0.4 183,466 + BPHYT_RS20610 0.65 +0.1 183,467 - BPHYT_RS20610 0.65 +0.1 183,578 - BPHYT_RS20610 0.77 -0.4 183,745 - +0.1
Or see this region's nucleotide sequence