Experiment: Post-colonization (Day 1) - Cage4;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0307 and BT0308 are separated by 346 nucleotides BT0308 and BT0309 are separated by 74 nucleotides
BT0307: BT0307 - phosphofructokinase (NCBI ptt file), at 368,717 to 370,363
BT0307
BT0308: BT0308 - putative glycosyl hydrolase (NCBI ptt file), at 370,710 to 371,414
BT0308
BT0309: BT0309 - Dihydrolipoamide dehydrogenase (NCBI ptt file), at 371,489 to 372,832
BT0309
Position (kb) 370
371
372 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 370.382 kb on + strand at 370.382 kb on + strand at 370.446 kb on - strand at 370.454 kb on + strand at 370.491 kb on + strand at 370.492 kb on - strand at 370.495 kb on + strand at 370.495 kb on + strand at 370.495 kb on + strand at 370.497 kb on + strand at 370.500 kb on + strand at 370.532 kb on + strand at 370.733 kb on - strand at 370.764 kb on - strand at 370.780 kb on - strand at 370.790 kb on + strand, within BT0308 at 370.931 kb on + strand, within BT0308 at 370.940 kb on + strand, within BT0308 at 370.996 kb on - strand, within BT0308 at 371.005 kb on - strand, within BT0308 at 371.006 kb on + strand, within BT0308 at 371.052 kb on - strand, within BT0308 at 371.161 kb on + strand, within BT0308 at 371.161 kb on + strand, within BT0308 at 371.162 kb on - strand, within BT0308 at 371.193 kb on + strand, within BT0308 at 371.193 kb on + strand, within BT0308 at 371.272 kb on - strand, within BT0308 at 371.298 kb on - strand, within BT0308 at 371.318 kb on + strand, within BT0308 at 371.432 kb on - strand at 371.489 kb on - strand at 371.506 kb on + strand at 371.507 kb on - strand at 371.507 kb on - strand at 371.595 kb on + strand at 371.623 kb on + strand at 371.623 kb on + strand at 371.643 kb on + strand, within BT0309 at 371.796 kb on - strand, within BT0309 at 371.954 kb on - strand, within BT0309 at 372.013 kb on + strand, within BT0309 at 372.015 kb on + strand, within BT0309 at 372.015 kb on + strand, within BT0309 at 372.143 kb on - strand, within BT0309 at 372.220 kb on - strand, within BT0309 at 372.242 kb on - strand, within BT0309 at 372.290 kb on - strand, within BT0309 at 372.322 kb on - strand, within BT0309 at 372.408 kb on - strand, within BT0309
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 1) - Cage4;Mouse5 remove 370,382 + -0.0 370,382 + -2.4 370,446 - -1.3 370,454 + -0.7 370,491 + -0.7 370,492 - -3.0 370,495 + +2.9 370,495 + -0.2 370,495 + +0.3 370,497 + -2.9 370,500 + -2.1 370,532 + -0.9 370,733 - -3.3 370,764 - +2.3 370,780 - -0.2 370,790 + BT0308 0.11 -1.9 370,931 + BT0308 0.31 -0.7 370,940 + BT0308 0.33 -0.5 370,996 - BT0308 0.41 -1.3 371,005 - BT0308 0.42 -0.5 371,006 + BT0308 0.42 -0.3 371,052 - BT0308 0.49 +0.0 371,161 + BT0308 0.64 +1.1 371,161 + BT0308 0.64 -1.5 371,162 - BT0308 0.64 -1.8 371,193 + BT0308 0.69 -0.4 371,193 + BT0308 0.69 -3.8 371,272 - BT0308 0.80 -2.3 371,298 - BT0308 0.83 -0.3 371,318 + BT0308 0.86 +2.3 371,432 - -0.4 371,489 - -0.4 371,506 + +1.1 371,507 - -1.5 371,507 - -1.3 371,595 + -0.7 371,623 + -0.3 371,623 + -0.7 371,643 + BT0309 0.11 -1.4 371,796 - BT0309 0.23 -1.1 371,954 - BT0309 0.35 -1.3 372,013 + BT0309 0.39 -0.7 372,015 + BT0309 0.39 -0.4 372,015 + BT0309 0.39 -0.0 372,143 - BT0309 0.49 +0.7 372,220 - BT0309 0.54 -2.7 372,242 - BT0309 0.56 -0.1 372,290 - BT0309 0.60 -0.7 372,322 - BT0309 0.62 -0.7 372,408 - BT0309 0.68 -0.0
Or see this region's nucleotide sequence