Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3162

Experiment: Post-colonization (Day 1) - Cage2;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 1) - Cage2;Mouse2
4,030,355	-				+2.2
4,030,357	+				-1.6
4,030,378	-				+0.7
4,030,407	+				-2.2
4,030,407	+				-0.9
4,030,408	-				-0.5
4,030,431	+				+0.6
4,030,472	+				+0.1
4,030,477	-				-1.6
4,030,483	+				-1.1
4,030,484	-				+2.4
4,030,484	-				-0.3
4,030,488	+				+0.8
4,030,493	-				-2.4
4,030,551	+				+1.4
4,030,551	+				-2.5
4,030,552	-				-0.6
4,030,559	+				+0.3
4,030,560	-				+0.2
4,030,572	-				-0.5
4,030,596	+				-0.7
4,030,600	+				-1.7
4,030,605	+				-0.2
4,030,643	-				-2.7
4,030,645	+				-0.1
4,030,652	-				-1.2
4,030,652	-				-1.5
4,030,656	+				-1.6
4,030,706	+		BT3161	0.12	-1.9
4,030,707	-		BT3161	0.12	+0.0
4,030,707	-		BT3161	0.12	-0.9
4,030,708	+		BT3161	0.12	-1.6
4,030,835	+		BT3161	0.31	-2.1
4,030,836	-		BT3161	0.31	-1.7
4,030,839	+		BT3161	0.31	-0.9
4,030,839	+		BT3161	0.31	-0.9
4,030,840	-		BT3161	0.32	+0.8
4,030,840	-		BT3161	0.32	-2.1
4,030,913	-		BT3161	0.42	+1.4
4,030,964	-		BT3161	0.50	-2.3
4,030,982	-		BT3161	0.53	-1.0
4,031,015	-		BT3161	0.58	-0.7
4,031,115	+		BT3161	0.72	+1.8
4,031,115	+		BT3161	0.72	-0.2
4,031,140	+		BT3161	0.76	-0.7
4,031,173	-		BT3161	0.81	-0.7
4,031,253	+				-2.4
4,031,278	-				+1.0
4,031,278	-				-2.7
4,031,278	-				-0.2
4,031,286	+				-0.5
4,031,287	-				-2.4
4,031,292	+				-1.0
4,031,293	-				-0.9
4,031,293	-				-0.9
4,031,363	+				-0.9
4,031,386	+				-0.3
4,031,386	+				+0.3
4,031,386	+				+0.1
4,031,386	+				-2.3
4,031,407	+				-0.2
4,031,418	-				-0.6
4,031,432	-		BT3162	0.11	-1.9
4,031,456	-		BT3162	0.14	-1.7
4,031,528	+		BT3162	0.22	-3.5
4,031,529	-		BT3162	0.22	-1.7
4,031,536	+		BT3162	0.23	-1.4
4,031,536	+		BT3162	0.23	-0.9
4,031,545	+		BT3162	0.24	-1.5
4,031,587	+		BT3162	0.28	-3.8
4,031,597	+		BT3162	0.29	+1.4
4,031,601	-		BT3162	0.30	-1.1
4,031,605	+		BT3162	0.30	+0.7
4,031,606	-		BT3162	0.30	-0.6
4,031,615	+		BT3162	0.31	-0.7
4,031,615	+		BT3162	0.31	-2.2
4,031,658	-		BT3162	0.36	+0.7
4,031,703	+		BT3162	0.41	-0.2
4,031,703	+		BT3162	0.41	-1.9
4,031,719	+		BT3162	0.43	-0.8
4,031,760	-		BT3162	0.47	-0.9
4,031,775	+		BT3162	0.49	-1.3
4,031,776	-		BT3162	0.49	-1.3
4,031,794	+		BT3162	0.51	-2.1
4,031,794	+		BT3162	0.51	-1.9
4,031,794	+		BT3162	0.51	-2.0
4,031,794	+		BT3162	0.51	-1.2
4,031,794	+		BT3162	0.51	-1.4
4,031,794	+		BT3162	0.51	+0.4
4,031,796	+		BT3162	0.51	-1.0
4,031,796	+		BT3162	0.51	-1.4
4,031,796	+		BT3162	0.51	-0.9
4,031,796	+		BT3162	0.51	-0.9
4,031,797	-		BT3162	0.51	-1.6
4,031,797	-		BT3162	0.51	-1.4
4,031,801	+		BT3162	0.52	+0.1
4,031,802	-		BT3162	0.52	-1.1
4,031,802	-		BT3162	0.52	-1.2
4,031,804	-		BT3162	0.52	-1.5
4,031,804	-		BT3162	0.52	-1.4
4,031,833	+		BT3162	0.55	-2.3
4,031,855	+		BT3162	0.58	-3.1
4,031,855	+		BT3162	0.58	+0.4
4,031,857	+		BT3162	0.58	-1.1
4,031,857	+		BT3162	0.58	-2.7
4,031,858	-		BT3162	0.58	-1.7
4,031,858	-		BT3162	0.58	-2.2
4,031,902	+		BT3162	0.63	-1.5
4,031,902	+		BT3162	0.63	-1.6
4,031,903	-		BT3162	0.63	-0.9
4,031,905	-		BT3162	0.63	+0.2
4,031,906	+		BT3162	0.63	+1.0
4,031,923	+		BT3162	0.65	+0.8
4,031,923	+		BT3162	0.65	-1.7
4,031,924	-		BT3162	0.65	-1.9
4,031,924	-		BT3162	0.65	-1.0
4,031,959	-		BT3162	0.69	-1.2
4,031,972	-		BT3162	0.71	-0.7
4,031,997	+		BT3162	0.74	-2.1
4,032,066	+		BT3162	0.81	-2.0
4,032,107	+		BT3162	0.86	-0.5
4,032,138	+		BT3162	0.89	-1.2
4,032,138	+		BT3162	0.89	-2.1
4,032,139	-		BT3162	0.89	+0.2
4,032,139	-		BT3162	0.89	-2.0
4,032,144	+		BT3162	0.90	-1.2
4,032,176	-				-0.9
4,032,195	+				-0.9
4,032,195	+				+1.4
4,032,196	-				-1.7
4,032,274	-				-1.1
4,032,274	-				+0.3
4,032,274	-				-3.3
4,032,299	+				-2.6
4,032,349	+				-0.5
4,032,349	+				+2.0
4,032,405	+				-0.4
4,032,406	-				+2.4
4,032,429	+				-1.4
4,032,430	-				-1.0
4,032,432	+				+0.4
4,032,442	-				-1.4
4,032,465	-				-0.1
4,032,503	+		BT3163	0.11	-0.2
4,032,569	+		BT3163	0.15	+0.2
4,032,581	-		BT3163	0.15	-1.2
4,032,592	-		BT3163	0.16	-1.4
4,032,623	+		BT3163	0.17	-1.2
4,032,624	-		BT3163	0.17	-1.6
4,032,624	-		BT3163	0.17	+0.0
4,032,626	+		BT3163	0.17	+0.8
4,032,635	-		BT3163	0.18	-1.9
4,032,736	+		BT3163	0.23	-3.1
4,032,737	-		BT3163	0.23	+1.0
4,032,737	-				-0.6
4,032,737	-		BT3163	0.23	-0.3
4,032,737	-		BT3163	0.23	-2.0
4,032,760	+		BT3163	0.24	+1.4
4,032,761	-		BT3163	0.24	-1.0
4,032,800	+		BT3163	0.26	+1.8
4,032,800	+		BT3163	0.26	-0.9
4,032,814	-		BT3163	0.27	-0.2
4,032,814	-		BT3163	0.27	-2.2
4,032,833	-		BT3163	0.28	-2.1
4,032,833	-		BT3163	0.28	-1.2
4,032,842	-		BT3163	0.28	-0.4
4,032,842	-		BT3163	0.28	-1.8
4,032,865	+		BT3163	0.29	-1.0
4,032,895	+		BT3163	0.31	-0.7
4,032,896	-		BT3163	0.31	-3.1
4,032,896	-		BT3163	0.31	-2.2
4,032,896	-		BT3163	0.31	+0.2
4,032,902	-		BT3163	0.31	-2.0
4,032,918	+		BT3163	0.32	-0.3
4,032,918	+		BT3163	0.32	-1.0
4,032,919	-		BT3163	0.32	-0.7
4,032,929	+		BT3163	0.32	-1.9
4,032,946	+		BT3163	0.33	+0.7
4,032,947	-		BT3163	0.33	-0.3
4,032,964	+		BT3163	0.34	-0.4
4,032,964	+		BT3163	0.34	-3.0
4,032,965	-		BT3163	0.34	-1.0
4,032,965	-		BT3163	0.34	+0.1
4,032,967	-		BT3163	0.34	-0.3
4,032,967	-		BT3163	0.34	-1.2
4,032,967	-		BT3163	0.34	-0.9
4,033,008	+		BT3163	0.36	-1.6
4,033,009	-		BT3163	0.36	+0.3
4,033,013	-		BT3163	0.36	+0.0
4,033,029	-		BT3163	0.37	-0.4
4,033,054	+		BT3163	0.39	-0.0
4,033,054	+		BT3163	0.39	+1.1
4,033,093	+		BT3163	0.40	-0.6
4,033,093	+		BT3163	0.40	-1.0