Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4566

Experiment: MBOA 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 2.5 mM
5,430,015	-				+1.3
5,430,111	-				-0.1
5,430,115	+				+0.3
5,430,181	-				+0.0
5,430,184	+				+1.3
5,430,184	+				+1.3
5,430,185	-				-1.2
5,430,355	-		Psyr_4566	0.12	-0.2
5,430,355	-		Psyr_4566	0.12	-0.2
5,430,597	+		Psyr_4566	0.29	-1.0
5,430,598	-		Psyr_4566	0.29	+0.6
5,430,598	-		Psyr_4566	0.29	-0.7
5,430,752	+		Psyr_4566	0.40	-0.7
5,430,797	+		Psyr_4566	0.43	-0.7
5,430,801	+		Psyr_4566	0.43	+2.3
5,430,801	+		Psyr_4566	0.43	+0.3
5,430,801	+		Psyr_4566	0.43	-0.2
5,430,801	+		Psyr_4566	0.43	-1.0
5,430,801	+		Psyr_4566	0.43	+0.3
5,430,802	-		Psyr_4566	0.43	+0.3
5,430,802	-		Psyr_4566	0.43	+1.3
5,430,802	-		Psyr_4566	0.43	+0.3
5,430,802	-		Psyr_4566	0.43	-2.0
5,430,802	-		Psyr_4566	0.43	+1.3
5,430,802	-		Psyr_4566	0.43	-0.7
5,430,802	-		Psyr_4566	0.43	-0.2
5,430,859	+		Psyr_4566	0.47	-1.0
5,430,859	+		Psyr_4566	0.47	-1.8
5,430,859	+		Psyr_4566	0.47	+2.3
5,430,859	+		Psyr_4566	0.47	+0.3
5,430,859	+		Psyr_4566	0.47	-0.2
5,430,860	-		Psyr_4566	0.47	-1.5
5,430,860	-		Psyr_4566	0.47	+2.9
5,430,860	-		Psyr_4566	0.47	+1.3
5,430,860	-		Psyr_4566	0.47	+1.3
5,430,945	+		Psyr_4566	0.53	-1.5
5,430,945	+		Psyr_4566	0.53	-0.5
5,430,945	+		Psyr_4566	0.53	-0.2
5,430,945	+		Psyr_4566	0.53	+0.3
5,430,946	-		Psyr_4566	0.53	+0.3
5,430,947	+		Psyr_4566	0.53	-2.5
5,430,948	-		Psyr_4566	0.53	+1.3
5,430,948	-		Psyr_4566	0.53	-0.2
5,430,948	-		Psyr_4566	0.53	+1.3
5,430,948	-		Psyr_4566	0.53	-0.5
5,430,948	-		Psyr_4566	0.53	+1.3
5,430,948	-		Psyr_4566	0.53	-1.5
5,430,979	-		Psyr_4566	0.56	+1.3
5,430,979	-		Psyr_4566	0.56	+1.3
5,430,991	+		Psyr_4566	0.56	-0.2
5,431,028	+		Psyr_4566	0.59	+2.3
5,431,028	+		Psyr_4566	0.59	+0.3
5,431,029	-		Psyr_4566	0.59	+0.3
5,431,029	-		Psyr_4566	0.59	-2.1
5,431,029	-		Psyr_4566	0.59	-0.2
5,431,043	+		Psyr_4566	0.60	-0.7
5,431,064	-		Psyr_4566	0.62	-1.8
5,431,070	+		Psyr_4566	0.62	-0.2
5,431,070	+		Psyr_4566	0.62	-1.8
5,431,071	-		Psyr_4566	0.62	+1.3
5,431,073	+		Psyr_4566	0.62	-1.8
5,431,074	-		Psyr_4566	0.62	+1.3
5,431,074	-		Psyr_4566	0.62	+0.3
5,431,074	-		Psyr_4566	0.62	-0.7
5,431,074	-		Psyr_4566	0.62	-1.5
5,431,208	+		Psyr_4566	0.72	+1.3
5,431,208	+		Psyr_4566	0.72	+0.3
5,431,319	+		Psyr_4566	0.79	-0.1
5,431,319	+		Psyr_4566	0.79	-1.0
5,431,320	-		Psyr_4566	0.79	+1.3
5,431,320	-		Psyr_4566	0.79	-2.0
5,431,320	-		Psyr_4566	0.79	+1.3
5,431,324	+		Psyr_4566	0.80	-0.2
5,431,325	-		Psyr_4566	0.80	+1.3
5,431,331	+		Psyr_4566	0.80	-1.0
5,431,331	+		Psyr_4566	0.80	+0.3
5,431,331	+		Psyr_4566	0.80	+1.3
5,431,331	+		Psyr_4566	0.80	-0.2
5,431,332	-		Psyr_4566	0.80	+1.3
5,431,332	-		Psyr_4566	0.80	-2.5
5,431,332	-		Psyr_4566	0.80	+1.3
5,431,403	+		Psyr_4566	0.85	+0.3
5,431,404	-		Psyr_4566	0.85	+1.3
5,431,405	+		Psyr_4566	0.85	+2.3
5,431,414	+		Psyr_4566	0.86	-1.5
5,431,446	-		Psyr_4566	0.88	+1.3
5,431,473	+				-1.0
5,431,473	+				+0.3
5,431,603	+				-0.8
5,431,604	-				+1.4
5,431,628	+				+1.2
5,431,628	+				-0.6
5,431,628	+				-1.3
5,431,628	+				-1.1
5,431,628	+				-1.0
5,431,628	+				+1.4
5,431,628	+				-0.6
5,431,628	+				-0.1
5,431,628	+				+1.4
5,431,628	+				-0.1
5,431,628	+				-1.6
5,431,628	+				-1.2
5,431,628	+				+1.4
5,431,628	+				-0.4
5,431,628	+				-2.1
5,431,629	-				-2.0
5,431,629	-				-1.2
5,431,629	-				-1.2
5,431,629	-				+0.0
5,431,629	-				-0.3
5,431,629	-				-2.2
5,431,629	-				-1.8
5,431,629	-				+0.1
5,431,632	+				+1.4
5,431,632	+				+0.0
5,431,632	+				+2.9
5,431,632	+				-0.5
5,431,632	+				-1.5
5,431,632	+				-1.1
5,431,632	+				+0.5
5,431,632	+				+0.4
5,431,632	+				-1.2
5,431,632	+				-1.3
5,431,632	+				-0.6
5,431,632	+				-0.9
5,431,632	+				-2.0
5,431,632	+				+0.1
5,431,632	+				-0.6
5,431,632	+				-0.6
5,431,632	+				+1.9
5,431,632	+				+1.6
5,431,632	+				+0.1
5,431,632	+				-1.5
5,431,632	+				-1.2
5,431,633	-				-0.2
5,431,633	-				+0.0
5,431,633	-				-0.4
5,431,633	-				+1.4
5,431,633	-				-0.8
5,431,633	-				-1.0
5,431,633	-				-0.8
5,431,633	-				-1.6
5,431,633	-				-0.1
5,431,633	-				+1.0
5,431,633	-				-0.1
5,431,633	-				-1.8
5,431,633	-				-2.1
5,431,633	-				-0.6
5,431,633	-				+2.4
5,431,633	-				-1.2
5,431,633	-				+0.1
5,431,633	-				-0.8
5,431,633	-				-0.1
5,431,633	-				-0.2
5,431,633	-				+1.2
5,431,633	-				-1.0
5,431,633	-				+1.4
5,431,717	+				+0.1
5,431,718	+				-0.2
5,431,718	+				+0.0
5,431,718	+				+0.5
5,431,718	+				+1.0
5,431,718	+				+0.6
5,431,719	-				-0.9
5,431,719	-				-0.6
5,431,719	-				+0.2
5,431,719	-				-0.5
5,431,719	-				+2.7
5,431,719	-				-0.5
5,431,719	-				+0.5
5,431,719	-				-0.8
5,431,719	-				+2.2
5,431,719	-				+0.4
5,431,719	-				+0.0
5,431,909	+		Psyr_4567	0.27	-0.2
5,431,910	-		Psyr_4567	0.27	-2.1
5,431,910	-		Psyr_4567	0.27	-0.2
5,431,910	-		Psyr_4567	0.27	+0.1
5,432,181	+		Psyr_4567	0.52	+0.4
5,432,181	+		Psyr_4567	0.52	+0.8
5,432,182	-		Psyr_4567	0.52	-1.6
5,432,182	-		Psyr_4567	0.52	-1.6
5,432,182	-		Psyr_4567	0.52	-1.5
5,432,222	+		Psyr_4567	0.55	-0.6
5,432,222	+		Psyr_4567	0.55	+0.4
5,432,223	-		Psyr_4567	0.55	-0.6
5,432,324	-		Psyr_4567	0.65	-1.2
5,432,324	-		Psyr_4567	0.65	-0.4
5,432,545	+		Psyr_4567	0.85	+0.8