Experiment: MBOA 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0015 and Psyr_0016 are separated by 153 nucleotides Psyr_0016 and Psyr_0017 overlap by 4 nucleotides
Psyr_0015: Psyr_0015 - Oxidoreductase alpha (molybdopterin) subunit, at 16,812 to 19,175
_0015
Psyr_0016: Psyr_0016 - TrkA-N:TrkA-C, at 19,329 to 20,702
_0016
Psyr_0017: Psyr_0017 - 16S rRNA m(5)C-967 methyltransferase, at 20,699 to 22,045
_0017
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.640 kb on + strand, within Psyr_0015 at 18.640 kb on + strand, within Psyr_0015 at 18.641 kb on - strand, within Psyr_0015 at 18.641 kb on - strand, within Psyr_0015 at 18.641 kb on - strand, within Psyr_0015 at 18.641 kb on - strand, within Psyr_0015 at 18.661 kb on + strand, within Psyr_0015 at 18.661 kb on + strand, within Psyr_0015 at 18.662 kb on - strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.700 kb on + strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.701 kb on - strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.784 kb on + strand, within Psyr_0015 at 18.785 kb on - strand, within Psyr_0015 at 18.785 kb on - strand, within Psyr_0015 at 18.785 kb on - strand, within Psyr_0015 at 18.785 kb on - strand, within Psyr_0015 at 18.824 kb on + strand, within Psyr_0015 at 18.825 kb on - strand, within Psyr_0015 at 18.878 kb on + strand, within Psyr_0015 at 18.878 kb on + strand, within Psyr_0015 at 18.879 kb on - strand, within Psyr_0015 at 18.879 kb on - strand, within Psyr_0015 at 18.956 kb on - strand at 18.956 kb on - strand at 18.956 kb on - strand at 19.194 kb on + strand at 19.231 kb on + strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.302 kb on + strand at 19.302 kb on + strand at 19.389 kb on + strand at 19.389 kb on + strand at 19.389 kb on + strand at 19.389 kb on + strand at 19.390 kb on - strand at 19.390 kb on - strand at 19.703 kb on - strand, within Psyr_0016 at 19.703 kb on - strand, within Psyr_0016 at 19.703 kb on - strand, within Psyr_0016 at 19.900 kb on + strand, within Psyr_0016 at 19.901 kb on - strand, within Psyr_0016 at 20.003 kb on + strand, within Psyr_0016 at 20.003 kb on + strand, within Psyr_0016 at 20.003 kb on + strand, within Psyr_0016 at 20.011 kb on + strand, within Psyr_0016 at 20.011 kb on + strand, within Psyr_0016 at 20.011 kb on + strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.012 kb on - strand, within Psyr_0016 at 20.140 kb on + strand, within Psyr_0016 at 20.140 kb on + strand, within Psyr_0016 at 20.140 kb on + strand, within Psyr_0016 at 20.141 kb on - strand, within Psyr_0016 at 20.141 kb on - strand, within Psyr_0016 at 20.185 kb on - strand, within Psyr_0016 at 20.185 kb on - strand, within Psyr_0016 at 20.185 kb on - strand, within Psyr_0016 at 20.185 kb on - strand, within Psyr_0016 at 20.185 kb on - strand, within Psyr_0016 at 20.221 kb on + strand, within Psyr_0016 at 20.221 kb on + strand, within Psyr_0016 at 20.221 kb on + strand, within Psyr_0016 at 20.225 kb on - strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.311 kb on + strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.312 kb on - strand, within Psyr_0016 at 20.343 kb on + strand, within Psyr_0016 at 20.343 kb on + strand, within Psyr_0016 at 20.343 kb on + strand, within Psyr_0016 at 20.343 kb on + strand, within Psyr_0016 at 20.343 kb on + strand, within Psyr_0016 at 20.344 kb on - strand, within Psyr_0016 at 20.367 kb on - strand, within Psyr_0016 at 20.392 kb on + strand, within Psyr_0016 at 20.392 kb on + strand, within Psyr_0016 at 20.441 kb on + strand, within Psyr_0016 at 20.441 kb on + strand, within Psyr_0016 at 20.708 kb on + strand at 20.757 kb on + strand at 20.760 kb on + strand at 20.761 kb on - strand at 20.761 kb on - strand at 20.875 kb on + strand, within Psyr_0017 at 20.938 kb on - strand, within Psyr_0017 at 20.938 kb on - strand, within Psyr_0017 at 20.965 kb on + strand, within Psyr_0017 at 20.966 kb on - strand, within Psyr_0017 at 20.966 kb on - strand, within Psyr_0017 at 20.966 kb on - strand, within Psyr_0017 at 21.254 kb on + strand, within Psyr_0017 at 21.255 kb on - strand, within Psyr_0017 at 21.492 kb on + strand, within Psyr_0017 at 21.493 kb on - strand, within Psyr_0017 at 21.493 kb on - strand, within Psyr_0017
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 2.5 mM remove 18,640 + Psyr_0015 0.77 +0.2 18,640 + Psyr_0015 0.77 -0.8 18,641 - Psyr_0015 0.77 -1.4 18,641 - Psyr_0015 0.77 +0.5 18,641 - Psyr_0015 0.77 +0.5 18,641 - Psyr_0015 0.77 +0.4 18,661 + Psyr_0015 0.78 +1.4 18,661 + Psyr_0015 0.78 +0.1 18,662 - Psyr_0015 0.78 +0.0 18,700 + Psyr_0015 0.80 -0.0 18,700 + Psyr_0015 0.80 +0.3 18,700 + Psyr_0015 0.80 +0.7 18,700 + Psyr_0015 0.80 +0.5 18,700 + Psyr_0015 0.80 +0.2 18,700 + Psyr_0015 0.80 +0.4 18,700 + Psyr_0015 0.80 -0.5 18,700 + Psyr_0015 0.80 -0.2 18,701 - Psyr_0015 0.80 -0.2 18,701 - Psyr_0015 0.80 -0.9 18,701 - Psyr_0015 0.80 -0.0 18,701 - Psyr_0015 0.80 -0.2 18,701 - Psyr_0015 0.80 +0.8 18,701 - Psyr_0015 0.80 -1.4 18,701 - Psyr_0015 0.80 -0.5 18,784 + Psyr_0015 0.83 -0.2 18,784 + Psyr_0015 0.83 -2.8 18,784 + Psyr_0015 0.83 +0.4 18,784 + Psyr_0015 0.83 +0.1 18,784 + Psyr_0015 0.83 -0.2 18,784 + Psyr_0015 0.83 -0.5 18,784 + Psyr_0015 0.83 -0.1 18,784 + Psyr_0015 0.83 -1.0 18,785 - Psyr_0015 0.83 -0.6 18,785 - Psyr_0015 0.83 +0.3 18,785 - Psyr_0015 0.83 +0.4 18,785 - Psyr_0015 0.83 -0.2 18,824 + Psyr_0015 0.85 -0.0 18,825 - Psyr_0015 0.85 -0.8 18,878 + Psyr_0015 0.87 -0.0 18,878 + Psyr_0015 0.87 -1.5 18,879 - Psyr_0015 0.87 +0.7 18,879 - Psyr_0015 0.87 +1.3 18,956 - -0.2 18,956 - -0.2 18,956 - -0.3 19,194 + -0.8 19,231 + +0.4 19,231 + -0.8 19,232 - -0.0 19,302 + -0.2 19,302 + -0.6 19,389 + -1.7 19,389 + -1.0 19,389 + -2.1 19,389 + -0.5 19,390 - -1.1 19,390 - +0.4 19,703 - Psyr_0016 0.27 -0.4 19,703 - Psyr_0016 0.27 -0.4 19,703 - Psyr_0016 0.27 +0.1 19,900 + Psyr_0016 0.42 -2.2 19,901 - Psyr_0016 0.42 -0.6 20,003 + Psyr_0016 0.49 -0.4 20,003 + Psyr_0016 0.49 -1.5 20,003 + Psyr_0016 0.49 -1.8 20,011 + Psyr_0016 0.50 -1.2 20,011 + Psyr_0016 0.50 +0.0 20,011 + Psyr_0016 0.50 +1.4 20,012 - Psyr_0016 0.50 +0.1 20,012 - Psyr_0016 0.50 +1.0 20,012 - Psyr_0016 0.50 +0.2 20,012 - Psyr_0016 0.50 +1.4 20,012 - Psyr_0016 0.50 -0.6 20,012 - Psyr_0016 0.50 +1.4 20,012 - Psyr_0016 0.50 +1.4 20,012 - Psyr_0016 0.50 -0.2 20,140 + Psyr_0016 0.59 +2.9 20,140 + Psyr_0016 0.59 +0.1 20,140 + Psyr_0016 0.59 -0.7 20,141 - Psyr_0016 0.59 +0.4 20,141 - Psyr_0016 0.59 -2.4 20,185 - Psyr_0016 0.62 +1.4 20,185 - Psyr_0016 0.62 -0.9 20,185 - Psyr_0016 0.62 -0.1 20,185 - Psyr_0016 0.62 -0.5 20,185 - Psyr_0016 0.62 -1.4 20,221 + Psyr_0016 0.65 -0.5 20,221 + Psyr_0016 0.65 -1.8 20,221 + Psyr_0016 0.65 -1.4 20,225 - Psyr_0016 0.65 -2.4 20,311 + Psyr_0016 0.71 -1.5 20,311 + Psyr_0016 0.71 +0.1 20,311 + Psyr_0016 0.71 -0.2 20,311 + Psyr_0016 0.71 -1.6 20,311 + Psyr_0016 0.71 -1.4 20,311 + Psyr_0016 0.71 -0.8 20,311 + Psyr_0016 0.71 +1.0 20,311 + Psyr_0016 0.71 -1.1 20,311 + Psyr_0016 0.71 +0.2 20,311 + Psyr_0016 0.71 +0.9 20,311 + Psyr_0016 0.71 -0.8 20,311 + Psyr_0016 0.71 -0.9 20,312 - Psyr_0016 0.72 -0.2 20,312 - Psyr_0016 0.72 -0.8 20,312 - Psyr_0016 0.72 -0.2 20,312 - Psyr_0016 0.72 -0.1 20,312 - Psyr_0016 0.72 -1.6 20,312 - Psyr_0016 0.72 -1.4 20,312 - Psyr_0016 0.72 -0.2 20,312 - Psyr_0016 0.72 +0.2 20,312 - Psyr_0016 0.72 -0.3 20,312 - Psyr_0016 0.72 +0.4 20,312 - Psyr_0016 0.72 -0.6 20,343 + Psyr_0016 0.74 -1.1 20,343 + Psyr_0016 0.74 +0.3 20,343 + Psyr_0016 0.74 +0.4 20,343 + Psyr_0016 0.74 +0.1 20,343 + Psyr_0016 0.74 -1.5 20,344 - Psyr_0016 0.74 +2.9 20,367 - Psyr_0016 0.76 -0.2 20,392 + Psyr_0016 0.77 +0.2 20,392 + Psyr_0016 0.77 -1.4 20,441 + Psyr_0016 0.81 -2.0 20,441 + Psyr_0016 0.81 -1.7 20,708 + -1.8 20,757 + +1.4 20,760 + -0.7 20,761 - -0.0 20,761 - -2.4 20,875 + Psyr_0017 0.13 -1.4 20,938 - Psyr_0017 0.18 -1.2 20,938 - Psyr_0017 0.18 +0.2 20,965 + Psyr_0017 0.20 -1.9 20,966 - Psyr_0017 0.20 -1.2 20,966 - Psyr_0017 0.20 -1.6 20,966 - Psyr_0017 0.20 -0.8 21,254 + Psyr_0017 0.41 -1.9 21,255 - Psyr_0017 0.41 -0.3 21,492 + Psyr_0017 0.59 +0.9 21,493 - Psyr_0017 0.59 -1.3 21,493 - Psyr_0017 0.59 +1.2
Or see this region's nucleotide sequence