Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4990

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
5,917,423	+		Psyr_4988	0.81	-0.2
5,917,423	+		Psyr_4988	0.81	-2.0
5,917,423	+		Psyr_4988	0.81	+0.6
5,917,434	+		Psyr_4988	0.82	-0.2
5,917,487	+		Psyr_4988	0.86	-0.5
5,917,515	+		Psyr_4988	0.87	+0.2
5,917,527	+		Psyr_4988	0.88	-1.2
5,917,543	-		Psyr_4988	0.89	-0.5
5,917,548	+		Psyr_4988	0.90	+1.0
5,917,548	+		Psyr_4988	0.90	+0.8
5,917,549	-		Psyr_4988	0.90	-0.1
5,917,550	+		Psyr_4988	0.90	-0.5
5,917,550	+		Psyr_4988	0.90	+1.0
5,917,550	+		Psyr_4988	0.90	-0.2
5,917,550	+		Psyr_4988	0.90	+0.6
5,917,550	+		Psyr_4988	0.90	-0.4
5,917,550	+		Psyr_4988	0.90	+0.7
5,917,551	-				+0.1
5,917,551	-				-0.7
5,917,577	+				-0.7
5,917,604	+				-0.0
5,917,650	+				-0.3
5,917,650	+				-2.4
5,917,650	+				-0.3
5,917,651	-				+2.1
5,917,651	-				+0.7
5,917,658	+				+0.7
5,917,658	+				-1.4
5,917,659	-				-0.4
5,917,662	+				-0.1
5,917,737	+		Psyr_4989	0.11	+0.0
5,917,738	-		Psyr_4989	0.12	-1.6
5,917,766	+		Psyr_4989	0.18	-0.2
5,917,767	-		Psyr_4989	0.18	+0.2
5,917,807	+		Psyr_4989	0.26	+0.5
5,917,835	-		Psyr_4989	0.32	+0.2
5,917,907	-		Psyr_4989	0.48	+1.4
5,918,004	+		Psyr_4989	0.68	+1.7
5,918,025	+		Psyr_4989	0.73	-0.1
5,918,040	+		Psyr_4989	0.76	+0.1
5,918,076	+		Psyr_4989	0.83	+1.6
5,918,287	+				-0.9
5,918,332	-				-0.2
5,918,338	-				+0.1
5,918,361	+				-0.5
5,918,397	-				+1.3
5,918,397	-				-0.6
5,918,412	-				-0.7
5,918,430	+				+0.5
5,918,487	+				+0.4
5,918,487	+				-0.7
5,918,487	+				+0.3
5,918,488	-				-0.7
5,918,488	-				-0.7
5,918,488	-				+0.0
5,918,488	-				+0.4
5,918,488	-				+1.9
5,918,488	-				+1.2
5,918,488	-				+0.7
5,918,488	-				+1.2
5,918,488	-				+0.8
5,918,488	-				+0.1
5,918,488	-				-0.2
5,918,664	+		Psyr_4990	0.10	+1.2
5,918,664	+		Psyr_4990	0.10	+0.2
5,918,739	+		Psyr_4990	0.13	-1.0
5,918,739	+		Psyr_4990	0.13	+0.6
5,918,739	+		Psyr_4990	0.13	-0.2
5,918,739	+		Psyr_4990	0.13	-0.4
5,918,739	+		Psyr_4990	0.13	+0.8
5,918,739	+		Psyr_4990	0.13	+1.8
5,918,740	-		Psyr_4990	0.13	+0.4
5,918,740	-		Psyr_4990	0.13	-0.9
5,918,740	-		Psyr_4990	0.13	-0.6
5,918,740	-		Psyr_4990	0.13	-1.3
5,918,740	-		Psyr_4990	0.13	-1.9
5,918,740	-		Psyr_4990	0.13	-0.6
5,918,740	-		Psyr_4990	0.13	-0.7
5,918,748	+		Psyr_4990	0.13	-0.6
5,918,874	+		Psyr_4990	0.18	-1.0
5,918,874	+		Psyr_4990	0.18	-0.1
5,918,874	+		Psyr_4990	0.18	-2.3
5,918,874	+		Psyr_4990	0.18	+0.8
5,918,874	+		Psyr_4990	0.18	-0.2
5,918,874	+		Psyr_4990	0.18	-1.4
5,918,875	-		Psyr_4990	0.18	+0.8
5,918,875	-		Psyr_4990	0.18	-0.3
5,918,875	-		Psyr_4990	0.18	+1.2
5,918,875	-		Psyr_4990	0.18	+0.3
5,918,875	-		Psyr_4990	0.18	-0.2
5,918,875	-		Psyr_4990	0.18	+0.1
5,918,875	-		Psyr_4990	0.18	+0.1
5,918,875	-		Psyr_4990	0.18	-0.1
5,918,875	-		Psyr_4990	0.18	-0.4
5,918,875	-		Psyr_4990	0.18	-0.4
5,918,924	-		Psyr_4990	0.20	+0.1
5,918,994	+		Psyr_4990	0.23	+0.9
5,919,051	+		Psyr_4990	0.25	-1.6
5,919,051	+		Psyr_4990	0.25	-0.9
5,919,051	+		Psyr_4990	0.25	+1.4
5,919,051	+		Psyr_4990	0.25	+0.1
5,919,051	+		Psyr_4990	0.25	+0.4
5,919,051	+		Psyr_4990	0.25	+0.8
5,919,051	+		Psyr_4990	0.25	-0.9
5,919,052	-		Psyr_4990	0.25	+2.0
5,919,052	-		Psyr_4990	0.25	-0.5
5,919,052	-		Psyr_4990	0.25	+0.4
5,919,052	-		Psyr_4990	0.25	+0.3
5,919,052	-		Psyr_4990	0.25	+1.4
5,919,052	-		Psyr_4990	0.25	-0.3
5,919,052	-		Psyr_4990	0.25	-0.1
5,919,052	-		Psyr_4990	0.25	-1.5
5,919,052	-		Psyr_4990	0.25	+0.7
5,919,052	-		Psyr_4990	0.25	+0.2
5,919,052	-		Psyr_4990	0.25	+0.4
5,919,052	-		Psyr_4990	0.25	-0.2
5,919,052	-		Psyr_4990	0.25	-1.2
5,919,064	-		Psyr_4990	0.25	+0.8
5,919,064	-		Psyr_4990	0.25	-0.0
5,919,168	+		Psyr_4990	0.29	+0.7
5,919,268	-		Psyr_4990	0.33	-0.4
5,919,268	-		Psyr_4990	0.33	+1.0
5,919,268	-		Psyr_4990	0.33	-1.7
5,919,274	-		Psyr_4990	0.34	-0.4
5,919,426	+		Psyr_4990	0.39	+0.3
5,919,427	-		Psyr_4990	0.39	-0.3
5,919,490	-		Psyr_4990	0.42	-0.2
5,919,493	-		Psyr_4990	0.42	-1.2
5,919,695	-		Psyr_4990	0.50	+0.2
5,919,723	+		Psyr_4990	0.51	-0.6
5,919,723	+		Psyr_4990	0.51	+0.4
5,919,723	+		Psyr_4990	0.51	+0.7
5,919,813	+		Psyr_4990	0.54	-0.3
5,919,813	+		Psyr_4990	0.54	+1.3
5,919,814	-		Psyr_4990	0.54	+0.0
5,919,814	-		Psyr_4990	0.54	-0.8
5,919,969	+		Psyr_4990	0.60	-1.1
5,919,975	+		Psyr_4990	0.60	+0.7
5,919,975	+		Psyr_4990	0.60	-1.6
5,919,975	+		Psyr_4990	0.60	+0.9
5,920,019	-		Psyr_4990	0.62	-0.1
5,920,039	-		Psyr_4990	0.63	-0.3
5,920,039	-		Psyr_4990	0.63	-0.2
5,920,039	-		Psyr_4990	0.63	+0.0
5,920,097	+		Psyr_4990	0.65	+1.1
5,920,097	+		Psyr_4990	0.65	-0.7
5,920,107	+		Psyr_4990	0.66	+0.5
5,920,107	+		Psyr_4990	0.66	+0.9
5,920,113	+		Psyr_4990	0.66	-0.7
5,920,113	+		Psyr_4990	0.66	+0.7
5,920,237	-		Psyr_4990	0.71	+0.1
5,920,237	-		Psyr_4990	0.71	+0.5
5,920,237	-		Psyr_4990	0.71	-0.1
5,920,237	-		Psyr_4990	0.71	+0.4
5,920,237	-		Psyr_4990	0.71	-0.0
5,920,237	-		Psyr_4990	0.71	+0.5
5,920,237	-		Psyr_4990	0.71	+0.4
5,920,237	-		Psyr_4990	0.71	+2.2
5,920,237	-		Psyr_4990	0.71	+0.4
5,920,237	-		Psyr_4990	0.71	-1.2
5,920,237	-		Psyr_4990	0.71	-0.2
5,920,237	-		Psyr_4990	0.71	+1.1
5,920,237	-		Psyr_4990	0.71	+0.2
5,920,239	-		Psyr_4990	0.71	+1.0
5,920,239	-		Psyr_4990	0.71	-0.9
5,920,239	-		Psyr_4990	0.71	+0.2
5,920,239	-		Psyr_4990	0.71	+0.9
5,920,243	-		Psyr_4990	0.71	+1.0
5,920,243	-		Psyr_4990	0.71	-0.7
5,920,243	-		Psyr_4990	0.71	-0.9
5,920,243	-		Psyr_4990	0.71	-0.2
5,920,258	-		Psyr_4990	0.71	+0.7
5,920,258	-		Psyr_4990	0.71	+1.0
5,920,258	-		Psyr_4990	0.71	-0.0
5,920,312	-		Psyr_4990	0.73	+0.4
5,920,312	-		Psyr_4990	0.73	-0.8
5,920,444	+		Psyr_4990	0.78	-1.4
5,920,444	+		Psyr_4990	0.78	-0.5
5,920,445	-		Psyr_4990	0.79	+1.5
5,920,489	-		Psyr_4990	0.80	+0.2
5,920,494	-		Psyr_4990	0.80	+0.2
5,920,494	-		Psyr_4990	0.80	+1.0
5,920,532	+		Psyr_4990	0.82	-0.6
5,920,565	+		Psyr_4990	0.83	-0.5
5,920,578	+		Psyr_4990	0.84	+0.3
5,920,579	-		Psyr_4990	0.84	-0.0
5,920,589	+		Psyr_4990	0.84	+2.1
5,920,627	+		Psyr_4990	0.86	-0.1
5,920,628	-		Psyr_4990	0.86	-0.8
5,920,655	+		Psyr_4990	0.87	-0.3
5,920,656	-		Psyr_4990	0.87	+1.4
5,920,681	+		Psyr_4990	0.88	-0.4
5,920,681	+		Psyr_4990	0.88	-0.7
5,920,801	+				+0.3
5,920,802	-				-0.9
5,920,802	-				+0.5
5,920,844	+				-0.1
5,920,895	+				+1.0
5,920,896	-				+0.2
5,920,922	+				+0.6
5,920,922	+				+0.7
5,920,923	-				+0.7
5,920,923	-				+1.1
5,921,048	+		Psyr_4991	0.12	-0.2
5,921,075	-		Psyr_4991	0.20	+1.4
5,921,123	+		Psyr_4991	0.35	+1.4
5,921,128	-		Psyr_4991	0.36	+1.4
5,921,158	+		Psyr_4991	0.46	-0.6
5,921,159	-		Psyr_4991	0.46	-0.6
5,921,226	-		Psyr_4991	0.67	+1.4
5,921,250	-		Psyr_4991	0.74	+1.4
5,921,365	+				-0.7
5,921,365	+				-0.2
5,921,463	+				+1.0
5,921,463	+				+0.4
5,921,472	+				-0.4
5,921,479	-				-0.2
5,921,486	+				-1.8
5,921,500	-				+0.4
5,921,504	+				-0.3
5,921,504	+				-0.8
5,921,505	-				-0.9
5,921,505	-				-0.1
5,921,561	-				+0.2
5,921,578	+				+3.4
5,921,579	-				-0.3
5,921,667	+				+0.9
5,921,667	+				+0.3
5,921,667	+				-0.2
5,921,667	+				+0.5
5,921,668	-				+0.7
5,921,705	-				+1.4
5,921,717	+				-0.1
5,921,717	+				-0.7
5,921,718	-				+0.6
5,921,743	+				+0.2
5,921,743	+				-1.2
5,921,743	+				-0.1
5,921,743	+				+0.2
5,921,744	-				-1.7
5,921,799	-				+1.7
5,921,799	-				+1.1
5,921,814	-				+0.8
5,921,814	-				-0.0
5,921,814	-				+1.1
5,921,814	-				-0.7
5,921,814	-				+1.4
5,921,814	-				+0.2
5,921,814	-				-1.6
5,921,841	-				+0.8