Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4828

Experiment: MBOA 1.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4827 and Psyr_4828 are separated by 610 nucleotidesPsyr_4828 and Psyr_4829 are separated by 113 nucleotides Psyr_4827: Psyr_4827 - BCCT transporter, at 5,727,414 to 5,729,408 _4827 Psyr_4828: Psyr_4828 - urocanate hydratase, at 5,730,019 to 5,731,716 _4828 Psyr_4829: Psyr_4829 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,731,830 to 5,732,798 _4829 Position (kb) 5730 5731 5732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5729.128 kb on + strand, within Psyr_4827at 5729.212 kb on + strandat 5729.212 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.233 kb on + strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.234 kb on - strandat 5729.236 kb on + strandat 5729.236 kb on + strandat 5729.237 kb on - strandat 5729.333 kb on + strandat 5729.334 kb on - strandat 5729.334 kb on - strandat 5729.350 kb on + strandat 5729.351 kb on - strandat 5729.431 kb on + strandat 5729.431 kb on + strandat 5729.432 kb on - strandat 5729.466 kb on - strandat 5729.466 kb on - strandat 5729.901 kb on - strandat 5729.910 kb on + strandat 5730.030 kb on + strandat 5730.030 kb on + strandat 5730.031 kb on - strandat 5730.031 kb on - strandat 5730.196 kb on + strand, within Psyr_4828at 5730.235 kb on + strand, within Psyr_4828at 5730.290 kb on + strand, within Psyr_4828at 5730.290 kb on + strand, within Psyr_4828at 5730.290 kb on + strand, within Psyr_4828at 5730.291 kb on - strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.427 kb on + strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.428 kb on - strand, within Psyr_4828at 5730.457 kb on + strand, within Psyr_4828at 5730.457 kb on + strand, within Psyr_4828at 5730.457 kb on + strand, within Psyr_4828at 5730.457 kb on + strand, within Psyr_4828at 5730.458 kb on - strand, within Psyr_4828at 5730.458 kb on - strand, within Psyr_4828at 5730.458 kb on - strand, within Psyr_4828at 5730.490 kb on + strand, within Psyr_4828at 5730.490 kb on + strand, within Psyr_4828at 5730.490 kb on + strand, within Psyr_4828at 5730.491 kb on - strand, within Psyr_4828at 5730.491 kb on - strand, within Psyr_4828at 5730.523 kb on + strand, within Psyr_4828at 5730.524 kb on - strand, within Psyr_4828at 5730.524 kb on - strand, within Psyr_4828at 5730.524 kb on - strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.629 kb on + strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.630 kb on - strand, within Psyr_4828at 5730.674 kb on - strand, within Psyr_4828at 5730.727 kb on + strand, within Psyr_4828at 5730.728 kb on - strand, within Psyr_4828at 5730.728 kb on - strand, within Psyr_4828at 5730.862 kb on + strand, within Psyr_4828at 5731.020 kb on + strand, within Psyr_4828at 5731.020 kb on + strand, within Psyr_4828at 5731.021 kb on - strand, within Psyr_4828at 5731.021 kb on - strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.087 kb on + strand, within Psyr_4828at 5731.088 kb on - strand, within Psyr_4828at 5731.088 kb on - strand, within Psyr_4828at 5731.088 kb on - strand, within Psyr_4828at 5731.088 kb on - strand, within Psyr_4828at 5731.088 kb on - strand, within Psyr_4828at 5731.088 kb on - strand, within Psyr_4828at 5731.162 kb on + strand, within Psyr_4828at 5731.162 kb on + strand, within Psyr_4828at 5731.162 kb on + strand, within Psyr_4828at 5731.162 kb on + strand, within Psyr_4828at 5731.162 kb on + strand, within Psyr_4828at 5731.162 kb on + strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.163 kb on - strand, within Psyr_4828at 5731.269 kb on + strand, within Psyr_4828at 5731.654 kb on + strandat 5731.666 kb on - strandat 5731.785 kb on + strandat 5731.785 kb on + strandat 5731.786 kb on - strandat 5731.786 kb on - strandat 5731.786 kb on - strandat 5731.809 kb on + strandat 5731.810 kb on - strandat 5731.817 kb on - strandat 5731.817 kb on - strandat 5731.836 kb on - strandat 5731.949 kb on + strand, within Psyr_4829at 5731.950 kb on - strand, within Psyr_4829at 5731.981 kb on + strand, within Psyr_4829at 5731.981 kb on + strand, within Psyr_4829at 5731.982 kb on - strand, within Psyr_4829at 5731.982 kb on - strand, within Psyr_4829at 5731.982 kb on - strand, within Psyr_4829at 5731.982 kb on - strand, within Psyr_4829at 5731.982 kb on - strand, within Psyr_4829at 5731.982 kb on - strand, within Psyr_4829at 5732.188 kb on + strand, within Psyr_4829at 5732.190 kb on + strand, within Psyr_4829at 5732.191 kb on - strand, within Psyr_4829at 5732.191 kb on - strand, within Psyr_4829at 5732.328 kb on + strand, within Psyr_4829at 5732.328 kb on + strand, within Psyr_4829at 5732.328 kb on + strand, within Psyr_4829at 5732.329 kb on - strand, within Psyr_4829at 5732.329 kb on - strand, within Psyr_4829at 5732.329 kb on - strand, within Psyr_4829at 5732.329 kb on - strand, within Psyr_4829at 5732.329 kb on - strand, within Psyr_4829at 5732.403 kb on + strand, within Psyr_4829at 5732.403 kb on + strand, within Psyr_4829at 5732.403 kb on + strand, within Psyr_4829at 5732.404 kb on - strand, within Psyr_4829at 5732.404 kb on - strand, within Psyr_4829at 5732.404 kb on - strand, within Psyr_4829at 5732.404 kb on - strand, within Psyr_4829at 5732.404 kb on - strand, within Psyr_4829at 5732.404 kb on - strand, within Psyr_4829at 5732.460 kb on + strand, within Psyr_4829at 5732.460 kb on + strand, within Psyr_4829at 5732.460 kb on + strand, within Psyr_4829at 5732.460 kb on + strand, within Psyr_4829at 5732.460 kb on + strand, within Psyr_4829at 5732.487 kb on + strand, within Psyr_4829at 5732.487 kb on + strand, within Psyr_4829at 5732.487 kb on + strand, within Psyr_4829at 5732.487 kb on + strand, within Psyr_4829at 5732.487 kb on + strand, within Psyr_4829at 5732.488 kb on - strand, within Psyr_4829at 5732.488 kb on - strand, within Psyr_4829at 5732.488 kb on - strand, within Psyr_4829at 5732.488 kb on - strand, within Psyr_4829at 5732.488 kb on - strand, within Psyr_4829at 5732.489 kb on - strand, within Psyr_4829at 5732.490 kb on + strand, within Psyr_4829at 5732.490 kb on + strand, within Psyr_4829at 5732.490 kb on + strand, within Psyr_4829at 5732.491 kb on - strand, within Psyr_4829at 5732.491 kb on - strand, within Psyr_4829at 5732.491 kb on - strand, within Psyr_4829at 5732.491 kb on - strand, within Psyr_4829at 5732.491 kb on - strand, within Psyr_4829

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 1.2 mM
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5,729,128 + Psyr_4827 0.86 -0.7
5,729,212 + -0.0
5,729,212 + -1.6
5,729,233 + +0.2
5,729,233 + +0.2
5,729,233 + +2.0
5,729,233 + +0.3
5,729,233 + +0.2
5,729,233 + -0.5
5,729,233 + -1.0
5,729,233 + +0.1
5,729,233 + -0.9
5,729,233 + -1.1
5,729,233 + +0.5
5,729,233 + -1.5
5,729,233 + +0.4
5,729,233 + -1.0
5,729,233 + -0.6
5,729,233 + +0.1
5,729,233 + +0.8
5,729,233 + +1.3
5,729,233 + +1.4
5,729,233 + -0.6
5,729,233 + -0.1
5,729,233 + -1.2
5,729,233 + +1.1
5,729,233 + -0.6
5,729,234 - +0.1
5,729,234 - -0.5
5,729,234 - +1.3
5,729,234 - -0.2
5,729,234 - +0.5
5,729,234 - +0.4
5,729,234 - -0.9
5,729,234 - -0.1
5,729,234 - +0.7
5,729,234 - -1.6
5,729,234 - +0.4
5,729,234 - -0.0
5,729,234 - -1.8
5,729,234 - +0.1
5,729,234 - -0.4
5,729,234 - +0.4
5,729,234 - -2.2
5,729,236 + -1.2
5,729,236 + +0.0
5,729,237 - +1.1
5,729,333 + -0.7
5,729,334 - +0.6
5,729,334 - -1.3
5,729,350 + -0.5
5,729,351 - +0.2
5,729,431 + +0.1
5,729,431 + -0.1
5,729,432 - +1.4
5,729,466 - +0.3
5,729,466 - +1.4
5,729,901 - -0.4
5,729,910 + -0.5
5,730,030 + +1.4
5,730,030 + -1.6
5,730,031 - +1.4
5,730,031 - -0.3
5,730,196 + Psyr_4828 0.10 -0.4
5,730,235 + Psyr_4828 0.13 +0.5
5,730,290 + Psyr_4828 0.16 -1.2
5,730,290 + Psyr_4828 0.16 +0.1
5,730,290 + Psyr_4828 0.16 -2.3
5,730,291 - Psyr_4828 0.16 +0.6
5,730,427 + Psyr_4828 0.24 +0.8
5,730,427 + Psyr_4828 0.24 +0.9
5,730,427 + Psyr_4828 0.24 +0.0
5,730,427 + Psyr_4828 0.24 +0.1
5,730,427 + Psyr_4828 0.24 -0.1
5,730,427 + Psyr_4828 0.24 -0.1
5,730,427 + Psyr_4828 0.24 +0.3
5,730,427 + Psyr_4828 0.24 -1.4
5,730,427 + Psyr_4828 0.24 -0.6
5,730,427 + Psyr_4828 0.24 +0.6
5,730,427 + Psyr_4828 0.24 +0.4
5,730,427 + Psyr_4828 0.24 +0.7
5,730,427 + Psyr_4828 0.24 +0.1
5,730,427 + Psyr_4828 0.24 -0.2
5,730,427 + Psyr_4828 0.24 +1.8
5,730,427 + Psyr_4828 0.24 -0.1
5,730,427 + Psyr_4828 0.24 +1.1
5,730,428 - Psyr_4828 0.24 -0.8
5,730,428 - Psyr_4828 0.24 -0.0
5,730,428 - Psyr_4828 0.24 +0.7
5,730,428 - Psyr_4828 0.24 -0.9
5,730,428 - Psyr_4828 0.24 +0.3
5,730,428 - Psyr_4828 0.24 +0.2
5,730,428 - Psyr_4828 0.24 -1.2
5,730,428 - Psyr_4828 0.24 +0.6
5,730,428 - Psyr_4828 0.24 +0.9
5,730,428 - Psyr_4828 0.24 -0.1
5,730,428 - Psyr_4828 0.24 +0.7
5,730,428 - Psyr_4828 0.24 +0.4
5,730,428 - Psyr_4828 0.24 +0.0
5,730,428 - Psyr_4828 0.24 -0.7
5,730,428 - Psyr_4828 0.24 -0.8
5,730,457 + Psyr_4828 0.26 +0.0
5,730,457 + Psyr_4828 0.26 +0.7
5,730,457 + Psyr_4828 0.26 -2.0
5,730,457 + Psyr_4828 0.26 +0.1
5,730,458 - Psyr_4828 0.26 -1.3
5,730,458 - Psyr_4828 0.26 -1.8
5,730,458 - Psyr_4828 0.26 +1.1
5,730,490 + Psyr_4828 0.28 +0.2
5,730,490 + Psyr_4828 0.28 +1.4
5,730,490 + Psyr_4828 0.28 -0.1
5,730,491 - Psyr_4828 0.28 +0.1
5,730,491 - Psyr_4828 0.28 -0.4
5,730,523 + Psyr_4828 0.30 -1.4
5,730,524 - Psyr_4828 0.30 -1.6
5,730,524 - Psyr_4828 0.30 +0.2
5,730,524 - Psyr_4828 0.30 -0.0
5,730,629 + Psyr_4828 0.36 +0.6
5,730,629 + Psyr_4828 0.36 +0.6
5,730,629 + Psyr_4828 0.36 +1.6
5,730,629 + Psyr_4828 0.36 -0.2
5,730,629 + Psyr_4828 0.36 -1.6
5,730,629 + Psyr_4828 0.36 +1.4
5,730,629 + Psyr_4828 0.36 -0.8
5,730,629 + Psyr_4828 0.36 +0.1
5,730,630 - Psyr_4828 0.36 -0.9
5,730,630 - Psyr_4828 0.36 -0.8
5,730,630 - Psyr_4828 0.36 +0.4
5,730,630 - Psyr_4828 0.36 -1.8
5,730,630 - Psyr_4828 0.36 -2.1
5,730,630 - Psyr_4828 0.36 +0.5
5,730,630 - Psyr_4828 0.36 +0.6
5,730,630 - Psyr_4828 0.36 +0.2
5,730,630 - Psyr_4828 0.36 +0.3
5,730,630 - Psyr_4828 0.36 +0.6
5,730,674 - Psyr_4828 0.39 +0.8
5,730,727 + Psyr_4828 0.42 +0.1
5,730,728 - Psyr_4828 0.42 -0.9
5,730,728 - Psyr_4828 0.42 +1.9
5,730,862 + Psyr_4828 0.50 -0.2
5,731,020 + Psyr_4828 0.59 +0.2
5,731,020 + Psyr_4828 0.59 +0.8
5,731,021 - Psyr_4828 0.59 -0.6
5,731,021 - Psyr_4828 0.59 +0.3
5,731,087 + Psyr_4828 0.63 +0.4
5,731,087 + Psyr_4828 0.63 -1.1
5,731,087 + Psyr_4828 0.63 +1.8
5,731,087 + Psyr_4828 0.63 -0.1
5,731,087 + Psyr_4828 0.63 +1.5
5,731,087 + Psyr_4828 0.63 +0.8
5,731,087 + Psyr_4828 0.63 +1.1
5,731,087 + Psyr_4828 0.63 -0.6
5,731,087 + Psyr_4828 0.63 +0.4
5,731,088 - Psyr_4828 0.63 -1.5
5,731,088 - Psyr_4828 0.63 +0.4
5,731,088 - Psyr_4828 0.63 +1.4
5,731,088 - Psyr_4828 0.63 -3.1
5,731,088 - Psyr_4828 0.63 +0.0
5,731,088 - Psyr_4828 0.63 +0.6
5,731,162 + Psyr_4828 0.67 +0.9
5,731,162 + Psyr_4828 0.67 +0.3
5,731,162 + Psyr_4828 0.67 +0.3
5,731,162 + Psyr_4828 0.67 +1.0
5,731,162 + Psyr_4828 0.67 -0.1
5,731,162 + Psyr_4828 0.67 +0.8
5,731,163 - Psyr_4828 0.67 -0.2
5,731,163 - Psyr_4828 0.67 -0.4
5,731,163 - Psyr_4828 0.67 -0.4
5,731,163 - Psyr_4828 0.67 +0.1
5,731,163 - Psyr_4828 0.67 +0.3
5,731,163 - Psyr_4828 0.67 +0.1
5,731,163 - Psyr_4828 0.67 +1.4
5,731,163 - Psyr_4828 0.67 -1.1
5,731,163 - Psyr_4828 0.67 +0.1
5,731,163 - Psyr_4828 0.67 -1.4
5,731,163 - Psyr_4828 0.67 +0.9
5,731,269 + Psyr_4828 0.74 +0.2
5,731,654 + +0.3
5,731,666 - -0.2
5,731,785 + +0.3
5,731,785 + +0.5
5,731,786 - -0.2
5,731,786 - +0.2
5,731,786 - +0.0
5,731,809 + +0.6
5,731,810 - -1.0
5,731,817 - +0.8
5,731,817 - -0.4
5,731,836 - -1.1
5,731,949 + Psyr_4829 0.12 +0.9
5,731,950 - Psyr_4829 0.12 -0.0
5,731,981 + Psyr_4829 0.16 -0.1
5,731,981 + Psyr_4829 0.16 -0.5
5,731,982 - Psyr_4829 0.16 +0.5
5,731,982 - Psyr_4829 0.16 -1.4
5,731,982 - Psyr_4829 0.16 +0.2
5,731,982 - Psyr_4829 0.16 -0.2
5,731,982 - Psyr_4829 0.16 +0.5
5,731,982 - Psyr_4829 0.16 -0.4
5,732,188 + Psyr_4829 0.37 -0.4
5,732,190 + Psyr_4829 0.37 +0.8
5,732,191 - Psyr_4829 0.37 -0.6
5,732,191 - Psyr_4829 0.37 -0.0
5,732,328 + Psyr_4829 0.51 +0.3
5,732,328 + Psyr_4829 0.51 -1.0
5,732,328 + Psyr_4829 0.51 -0.8
5,732,329 - Psyr_4829 0.51 +0.2
5,732,329 - Psyr_4829 0.51 -0.3
5,732,329 - Psyr_4829 0.51 -0.1
5,732,329 - Psyr_4829 0.51 +0.4
5,732,329 - Psyr_4829 0.51 +0.7
5,732,403 + Psyr_4829 0.59 +0.6
5,732,403 + Psyr_4829 0.59 -1.7
5,732,403 + Psyr_4829 0.59 +0.7
5,732,404 - Psyr_4829 0.59 -0.6
5,732,404 - Psyr_4829 0.59 -1.0
5,732,404 - Psyr_4829 0.59 +0.6
5,732,404 - Psyr_4829 0.59 -0.5
5,732,404 - Psyr_4829 0.59 +0.3
5,732,404 - Psyr_4829 0.59 -0.5
5,732,460 + Psyr_4829 0.65 -0.6
5,732,460 + Psyr_4829 0.65 -0.6
5,732,460 + Psyr_4829 0.65 -1.2
5,732,460 + Psyr_4829 0.65 -1.0
5,732,460 + Psyr_4829 0.65 -0.4
5,732,487 + Psyr_4829 0.68 +1.3
5,732,487 + Psyr_4829 0.68 -0.3
5,732,487 + Psyr_4829 0.68 -0.3
5,732,487 + Psyr_4829 0.68 +0.5
5,732,487 + Psyr_4829 0.68 -0.8
5,732,488 - Psyr_4829 0.68 +0.3
5,732,488 - Psyr_4829 0.68 +0.6
5,732,488 - Psyr_4829 0.68 +0.2
5,732,488 - Psyr_4829 0.68 -0.0
5,732,488 - Psyr_4829 0.68 +0.8
5,732,489 - Psyr_4829 0.68 -1.0
5,732,490 + Psyr_4829 0.68 -0.8
5,732,490 + Psyr_4829 0.68 -0.0
5,732,490 + Psyr_4829 0.68 -1.7
5,732,491 - Psyr_4829 0.68 -0.4
5,732,491 - Psyr_4829 0.68 +1.3
5,732,491 - Psyr_4829 0.68 +0.3
5,732,491 - Psyr_4829 0.68 -0.5
5,732,491 - Psyr_4829 0.68 -1.1

Or see this region's nucleotide sequence