Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4005

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
4,767,644	+		Psyr_4004	0.40	+0.0
4,767,748	-		Psyr_4004	0.47	+0.5
4,767,789	-		Psyr_4004	0.50	+0.7
4,768,001	+		Psyr_4004	0.64	+0.3
4,768,002	-		Psyr_4004	0.64	-1.0
4,768,217	-		Psyr_4004	0.78	-2.0
4,768,516	+				+0.3
4,768,516	+				-0.0
4,768,516	+				+0.9
4,768,516	+				+0.3
4,768,516	+				-0.8
4,768,516	+				-0.3
4,768,516	+				+0.4
4,768,516	+				+0.4
4,768,516	+				+0.9
4,768,516	+				+0.3
4,768,517	-				+0.0
4,768,517	-				+0.3
4,768,517	-				+1.1
4,768,517	-				+1.1
4,768,517	-				+1.0
4,768,517	-				-0.8
4,768,517	-				+0.4
4,768,522	-				+0.6
4,768,522	-				+0.4
4,768,522	-				-0.5
4,768,600	+				+0.4
4,768,600	+				-0.2
4,768,600	+				+0.6
4,768,600	+				+0.5
4,768,600	+				+0.6
4,768,600	+				+0.4
4,768,600	+				-1.4
4,768,600	+				+0.9
4,768,601	-				+0.3
4,768,601	-				-0.3
4,768,601	-				+0.5
4,768,601	-				+0.1
4,768,601	-				-0.8
4,768,601	-				+0.7
4,768,601	-				-1.4
4,768,601	-				+1.8
4,768,601	-				-1.9
4,768,601	-				-0.2
4,768,601	-				+1.4
4,768,601	-				+0.3
4,768,602	+				-0.6
4,768,602	+				-0.3
4,768,603	-				-0.5
4,768,603	-				+1.1
4,768,603	-				-0.6
4,768,603	-				-0.9
4,768,707	-		Psyr_4005	0.13	-0.1
4,768,742	+		Psyr_4005	0.16	-1.0
4,768,767	+		Psyr_4005	0.19	-0.0
4,768,853	+		Psyr_4005	0.26	+0.4
4,768,853	+		Psyr_4005	0.26	+1.1
4,768,854	-		Psyr_4005	0.26	+1.2
4,768,854	-		Psyr_4005	0.26	+0.2
4,768,854	-		Psyr_4005	0.26	+0.1
4,768,854	-		Psyr_4005	0.26	+1.0
4,768,928	+		Psyr_4005	0.33	+0.1
4,769,025	-		Psyr_4005	0.41	-0.7
4,769,101	-		Psyr_4005	0.48	+0.2
4,769,135	+		Psyr_4005	0.51	-1.0
4,769,136	-		Psyr_4005	0.51	-1.6
4,769,136	-		Psyr_4005	0.51	-0.3
4,769,136	-		Psyr_4005	0.51	-1.0
4,769,136	-		Psyr_4005	0.51	-1.6
4,769,210	+		Psyr_4005	0.58	-0.2
4,769,210	+		Psyr_4005	0.58	-0.7
4,769,211	-		Psyr_4005	0.58	+0.8
4,769,228	+		Psyr_4005	0.59	-1.2
4,769,229	-		Psyr_4005	0.59	+0.7
4,769,258	+		Psyr_4005	0.62	+0.4
4,769,259	-		Psyr_4005	0.62	-0.3
4,769,259	-		Psyr_4005	0.62	+0.1
4,769,259	-		Psyr_4005	0.62	+0.6
4,769,259	-		Psyr_4005	0.62	+1.6
4,769,259	-		Psyr_4005	0.62	+0.2
4,769,259	-		Psyr_4005	0.62	-0.4
4,769,339	+		Psyr_4005	0.69	-0.5
4,769,339	+		Psyr_4005	0.69	+1.9
4,769,339	+		Psyr_4005	0.69	+0.7
4,769,339	+		Psyr_4005	0.69	+0.2
4,769,339	+		Psyr_4005	0.69	+0.0
4,769,339	+		Psyr_4005	0.69	+0.5
4,769,340	-		Psyr_4005	0.69	+0.1
4,769,340	-		Psyr_4005	0.69	+0.6
4,769,340	-		Psyr_4005	0.69	-0.4
4,769,501	+		Psyr_4005	0.83	-0.3
4,769,501	+		Psyr_4005	0.83	+0.4
4,769,501	+		Psyr_4005	0.83	+1.0
4,769,501	+		Psyr_4005	0.83	-0.2
4,769,502	-		Psyr_4005	0.84	-0.1
4,769,565	-		Psyr_4005	0.89	+0.8
4,769,565	-		Psyr_4005	0.89	-0.3
4,769,590	+				+0.7
4,769,590	+				+0.0
4,769,590	+				-0.2
4,769,591	-				-0.1
4,769,848	+				+0.9
4,769,848	+				+0.1
4,769,848	+				-0.5
4,769,848	+				-0.4
4,769,848	+				-2.3
4,769,849	-				-0.9
4,769,849	-				-0.7
4,769,966	+				+0.9
4,769,966	+				-0.3
4,769,966	+				-0.1
4,769,966	+				+0.6
4,769,967	-				+2.4
4,769,967	-				-0.2
4,769,967	-				+0.4
4,769,967	-				+0.1
4,769,967	-				-0.8
4,769,967	-				+0.5
4,769,972	+				+0.5
4,769,972	+				-0.1
4,769,972	+				+0.3
4,769,972	+				+0.4
4,769,972	+				+0.2
4,769,973	-				+0.5
4,769,973	-				-0.2
4,769,987	+				-0.4
4,769,987	+				+0.9
4,769,987	+				+0.6
4,769,998	+				-0.2
4,769,998	+				+0.5
4,769,999	-				-0.3
4,769,999	-				-0.6
4,770,003	+				-0.5
4,770,003	+				-0.4
4,770,003	+				+0.1
4,770,003	+				-0.4
4,770,003	+				-1.3
4,770,003	+				-0.2
4,770,004	-				-0.1
4,770,004	-				-0.5
4,770,029	+				-0.5
4,770,029	+				-0.3
4,770,085	+				-1.4
4,770,085	+				+0.3
4,770,085	+				+0.4
4,770,085	+				+0.2
4,770,085	+				-2.8
4,770,085	+				-0.8
4,770,085	+				-0.8
4,770,085	+				-0.3
4,770,085	+				-0.8
4,770,085	+				-0.4
4,770,085	+				-1.1
4,770,085	+				-0.1
4,770,085	+				-1.1
4,770,086	-				+0.7
4,770,086	-				-2.6
4,770,086	-				+0.9
4,770,086	-				+0.4
4,770,086	-				+0.1
4,770,086	-				+0.9
4,770,086	-				-1.3
4,770,086	-				+2.2
4,770,086	-				-1.0
4,770,086	-				-0.0
4,770,086	-				-0.6
4,770,086	-				+0.0
4,770,086	-				-0.5
4,770,087	+				-0.1
4,770,087	+				-0.1
4,770,087	+				+0.4
4,770,087	+				-0.8
4,770,087	+				+0.1
4,770,088	-				+0.3
4,770,088	-				+0.1
4,770,088	-				-1.1
4,770,088	-				-0.7
4,770,088	-				+0.2
4,770,191	+				-1.5
4,770,301	+		Psyr_4006	0.20	-2.2
4,770,301	+		Psyr_4006	0.20	-0.9
4,770,302	-		Psyr_4006	0.20	-0.7
4,770,302	-		Psyr_4006	0.20	+2.4
4,770,302	-		Psyr_4006	0.20	-2.0
4,770,302	-		Psyr_4006	0.20	-1.3
4,770,302	-		Psyr_4006	0.20	-1.3
4,770,302	-		Psyr_4006	0.20	-1.0
4,770,319	+		Psyr_4006	0.23	-0.9
4,770,319	+		Psyr_4006	0.23	-0.4
4,770,423	+		Psyr_4006	0.39	+1.6
4,770,424	-		Psyr_4006	0.39	+0.6
4,770,424	-		Psyr_4006	0.39	-1.2
4,770,424	-		Psyr_4006	0.39	+0.7
4,770,424	-		Psyr_4006	0.39	+1.4
4,770,665	+		Psyr_4006	0.75	-0.8
4,770,682	+		Psyr_4006	0.78	-0.2
4,770,682	+		Psyr_4006	0.78	-1.0
4,770,682	+		Psyr_4006	0.78	+0.8
4,770,683	-		Psyr_4006	0.78	+0.6
4,770,683	-		Psyr_4006	0.78	+0.1
4,770,683	-		Psyr_4006	0.78	+1.6
4,770,683	-		Psyr_4006	0.78	-0.6