Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3877

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
4,616,874	+		Psyr_3875	0.83	+0.7
4,616,875	-		Psyr_3875	0.83	-2.1
4,616,886	+		Psyr_3875	0.84	+1.2
4,616,887	-		Psyr_3875	0.84	+1.7
4,616,887	-		Psyr_3875	0.84	+0.3
4,616,887	-		Psyr_3875	0.84	+1.2
4,616,913	+		Psyr_3875	0.88	+0.8
4,616,913	+		Psyr_3875	0.88	+0.5
4,616,914	-		Psyr_3875	0.88	+0.4
4,616,914	-		Psyr_3875	0.88	+0.6
4,616,914	-		Psyr_3875	0.88	+0.2
4,616,968	-				+0.9
4,616,968	-				+1.3
4,617,036	-				+0.3
4,617,036	-				+0.3
4,617,037	+				+1.0
4,617,037	+				+0.4
4,617,037	+				-0.2
4,617,037	+				-0.2
4,617,037	+				-0.1
4,617,037	+				+0.5
4,617,037	+				+1.4
4,617,037	+				-1.6
4,617,037	+				+0.3
4,617,038	-				-0.7
4,617,038	-				+0.6
4,617,179	+		Psyr_3876	0.26	+0.7
4,617,180	-		Psyr_3876	0.26	-0.4
4,617,185	+		Psyr_3876	0.27	-0.3
4,617,185	+		Psyr_3876	0.27	+1.6
4,617,185	+		Psyr_3876	0.27	+2.0
4,617,186	-		Psyr_3876	0.27	-0.1
4,617,186	-		Psyr_3876	0.27	+0.9
4,617,186	-		Psyr_3876	0.27	+0.7
4,617,209	+		Psyr_3876	0.30	+0.8
4,617,209	+		Psyr_3876	0.30	-0.0
4,617,209	+		Psyr_3876	0.30	+1.6
4,617,209	+		Psyr_3876	0.30	+0.4
4,617,209	+		Psyr_3876	0.30	-0.6
4,617,209	+		Psyr_3876	0.30	+1.1
4,617,209	+		Psyr_3876	0.30	+2.6
4,617,209	+		Psyr_3876	0.30	+0.2
4,617,209	+		Psyr_3876	0.30	-0.2
4,617,209	+		Psyr_3876	0.30	-0.5
4,617,209	+		Psyr_3876	0.30	+1.0
4,617,209	+		Psyr_3876	0.30	-1.0
4,617,210	-		Psyr_3876	0.30	+1.3
4,617,210	-		Psyr_3876	0.30	+0.2
4,617,210	-		Psyr_3876	0.30	+0.2
4,617,210	-		Psyr_3876	0.30	+0.4
4,617,210	-		Psyr_3876	0.30	-0.1
4,617,210	-		Psyr_3876	0.30	+0.6
4,617,210	-		Psyr_3876	0.30	+0.0
4,617,210	-		Psyr_3876	0.30	+1.0
4,617,210	-		Psyr_3876	0.30	+0.7
4,617,210	-		Psyr_3876	0.30	+0.2
4,617,210	-		Psyr_3876	0.30	+0.5
4,617,210	-		Psyr_3876	0.30	+0.4
4,617,211	+		Psyr_3876	0.30	+0.9
4,617,211	+		Psyr_3876	0.30	+0.2
4,617,212	-		Psyr_3876	0.30	-0.2
4,617,212	-		Psyr_3876	0.30	+1.3
4,617,213	+		Psyr_3876	0.31	+0.4
4,617,213	+		Psyr_3876	0.31	-0.0
4,617,213	+		Psyr_3876	0.31	+0.9
4,617,213	+		Psyr_3876	0.31	+0.6
4,617,213	+		Psyr_3876	0.31	+1.0
4,617,213	+		Psyr_3876	0.31	+0.1
4,617,213	+		Psyr_3876	0.31	+0.7
4,617,213	+		Psyr_3876	0.31	+1.1
4,617,213	+		Psyr_3876	0.31	+1.1
4,617,213	+		Psyr_3876	0.31	-0.8
4,617,214	+		Psyr_3876	0.31	+0.5
4,617,214	-		Psyr_3876	0.31	+1.1
4,617,214	-		Psyr_3876	0.31	+0.4
4,617,214	-		Psyr_3876	0.31	-0.1
4,617,214	-		Psyr_3876	0.31	+0.0
4,617,214	-		Psyr_3876	0.31	+0.8
4,617,214	-		Psyr_3876	0.31	-1.2
4,617,214	-		Psyr_3876	0.31	+0.5
4,617,214	-		Psyr_3876	0.31	-0.6
4,617,214	-		Psyr_3876	0.31	+0.3
4,617,214	-		Psyr_3876	0.31	-0.1
4,617,214	-		Psyr_3876	0.31	+0.0
4,617,214	-		Psyr_3876	0.31	+0.6
4,617,214	-		Psyr_3876	0.31	+0.9
4,617,214	-		Psyr_3876	0.31	+0.8
4,617,214	-		Psyr_3876	0.31	+0.8
4,617,214	-		Psyr_3876	0.31	+0.4
4,617,214	-		Psyr_3876	0.31	-0.8
4,617,230	+		Psyr_3876	0.33	-0.4
4,617,231	-		Psyr_3876	0.33	+0.8
4,617,242	+		Psyr_3876	0.35	-0.5
4,617,242	+		Psyr_3876	0.35	+0.4
4,617,243	-		Psyr_3876	0.35	+1.2
4,617,243	-		Psyr_3876	0.35	+0.4
4,617,243	-		Psyr_3876	0.35	+3.6
4,617,243	-		Psyr_3876	0.35	-0.2
4,617,342	-		Psyr_3876	0.49	+0.7
4,617,342	-		Psyr_3876	0.49	+1.0
4,617,434	+		Psyr_3876	0.62	+0.6
4,617,435	-		Psyr_3876	0.62	+1.1
4,617,440	+		Psyr_3876	0.62	+1.0
4,617,441	-		Psyr_3876	0.63	-0.1
4,617,441	-		Psyr_3876	0.63	+0.9
4,617,482	+		Psyr_3876	0.68	-0.7
4,617,482	+		Psyr_3876	0.68	+1.1
4,617,483	-		Psyr_3876	0.68	+0.3
4,617,495	+		Psyr_3876	0.70	+0.1
4,617,495	+		Psyr_3876	0.70	+0.8
4,617,495	+		Psyr_3876	0.70	+1.1
4,617,495	+		Psyr_3876	0.70	+0.9
4,617,495	+		Psyr_3876	0.70	+0.1
4,617,496	-		Psyr_3876	0.70	+1.0
4,617,496	-		Psyr_3876	0.70	+0.5
4,617,496	-		Psyr_3876	0.70	+1.1
4,617,496	-		Psyr_3876	0.70	+1.2
4,617,496	-		Psyr_3876	0.70	+1.4
4,617,496	-		Psyr_3876	0.70	+0.6
4,617,496	-		Psyr_3876	0.70	+1.1
4,617,496	-		Psyr_3876	0.70	+0.9
4,617,498	+		Psyr_3876	0.71	+0.7
4,617,498	+		Psyr_3876	0.71	+0.5
4,617,499	-		Psyr_3876	0.71	-0.0
4,617,499	-		Psyr_3876	0.71	-0.1
4,617,499	-		Psyr_3876	0.71	+2.0
4,617,623	+		Psyr_3876	0.88	+0.1
4,617,623	+		Psyr_3876	0.88	+0.6
4,617,623	+		Psyr_3876	0.88	+0.8
4,617,623	+		Psyr_3876	0.88	+0.5
4,617,624	-		Psyr_3876	0.88	+1.2
4,617,624	-		Psyr_3876	0.88	+1.1
4,617,730	+				+0.2
4,617,731	-				-0.9
4,617,818	+				+0.4
4,617,818	+				-0.3
4,617,818	+				+0.4
4,617,818	+				+0.2
4,617,818	+				-0.2
4,617,818	+				-1.0
4,617,818	+				-1.0
4,617,819	-				-0.4
4,617,819	-				+0.2
4,617,819	-				-0.1
4,617,819	-				+0.3
4,617,819	-				+0.4
4,617,819	-				-1.2
4,617,819	-				+2.1
4,617,819	-				+0.6
4,617,873	-		Psyr_3877	0.14	-0.4
4,618,111	-		Psyr_3877	0.35	+0.6
4,618,253	+		Psyr_3877	0.48	-0.3
4,618,253	+		Psyr_3877	0.48	-0.9
4,618,254	-		Psyr_3877	0.48	+0.6
4,618,254	-		Psyr_3877	0.48	+0.8
4,618,254	-		Psyr_3877	0.48	+2.4
4,618,254	-		Psyr_3877	0.48	+0.1
4,618,298	+		Psyr_3877	0.52	+0.9
4,618,299	-		Psyr_3877	0.52	-1.3
4,618,508	+		Psyr_3877	0.71	+0.7
4,618,509	-		Psyr_3877	0.71	+0.3
4,618,509	-		Psyr_3877	0.71	+0.3
4,618,739	+				+0.5
4,618,824	+				-0.3
4,618,824	+				-1.8
4,618,824	+				+1.4
4,618,824	+				+0.3
4,618,824	+				+0.2
4,618,824	+				-0.5
4,618,825	-				+1.4
4,618,825	-				+1.2
4,618,825	-				+1.7
4,618,825	-				-0.1
4,618,825	-				+1.6
4,618,825	-				+0.4
4,618,825	-				+0.2
4,618,825	-				+1.4
4,618,825	-				+0.1
4,618,825	-				+0.0
4,618,825	-				-0.2
4,618,825	-				+0.4
4,618,850	+				+1.7
4,618,850	+				+0.7
4,618,851	-				+0.9
4,618,851	-				+0.4
4,618,851	-				-0.2
4,618,851	-				+1.1
4,618,851	-				-1.2
4,618,851	-				-0.1
4,618,884	-				-0.4
4,619,240	+		Psyr_3878	0.51	+0.6
4,619,240	+		Psyr_3878	0.51	+0.2
4,619,241	-		Psyr_3878	0.52	+0.5
4,619,374	+		Psyr_3878	0.69	-0.2
4,619,374	+		Psyr_3878	0.69	+0.2
4,619,374	+		Psyr_3878	0.69	-0.6
4,619,374	+		Psyr_3878	0.69	+0.9
4,619,374	+		Psyr_3878	0.69	+0.8
4,619,374	+		Psyr_3878	0.69	+1.1
4,619,374	+		Psyr_3878	0.69	-0.2
4,619,375	-		Psyr_3878	0.69	+1.1
4,619,375	-		Psyr_3878	0.69	-0.2
4,619,375	-		Psyr_3878	0.69	-0.3
4,619,375	-		Psyr_3878	0.69	+0.7
4,619,505	+		Psyr_3878	0.86	+0.9
4,619,506	-		Psyr_3878	0.86	+0.8
4,619,609	+				+0.7
4,619,610	-				-0.1
4,619,610	-				+0.1
4,619,626	+				-0.2
4,619,685	+		Psyr_3879	0.12	-0.8
4,619,685	+		Psyr_3879	0.12	+0.7
4,619,685	+		Psyr_3879	0.12	+0.3
4,619,685	+		Psyr_3879	0.12	-0.5
4,619,685	+		Psyr_3879	0.12	-0.6
4,619,685	+		Psyr_3879	0.12	+0.7
4,619,686	-		Psyr_3879	0.12	-0.5
4,619,686	-		Psyr_3879	0.12	+2.2