Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5043

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
5,984,629	+		Psyr_5042	0.57	+1.0
5,984,629	+		Psyr_5042	0.57	+0.6
5,984,629	+		Psyr_5042	0.57	-0.4
5,984,629	+		Psyr_5042	0.57	+0.6
5,984,630	-		Psyr_5042	0.57	+1.0
5,984,630	-		Psyr_5042	0.57	-0.2
5,984,630	-		Psyr_5042	0.57	+1.5
5,984,630	-		Psyr_5042	0.57	+0.2
5,984,630	-		Psyr_5042	0.57	-1.0
5,984,630	-		Psyr_5042	0.57	+0.3
5,984,630	-		Psyr_5042	0.57	-0.1
5,984,630	-		Psyr_5042	0.57	+0.8
5,984,630	-		Psyr_5042	0.57	-2.5
5,984,630	-		Psyr_5042	0.57	-0.4
5,984,842	+		Psyr_5042	0.73	-0.8
5,984,842	+		Psyr_5042	0.73	+0.5
5,984,842	+		Psyr_5042	0.73	-0.3
5,984,842	+		Psyr_5042	0.73	+0.2
5,984,842	+		Psyr_5042	0.73	-0.2
5,984,843	-		Psyr_5042	0.73	+0.3
5,984,843	-		Psyr_5042	0.73	-1.0
5,984,843	-		Psyr_5042	0.73	+0.9
5,984,843	-		Psyr_5042	0.73	+0.7
5,984,843	-		Psyr_5042	0.73	-0.1
5,984,843	-		Psyr_5042	0.73	+0.7
5,985,085	+				+2.3
5,985,131	-				-0.2
5,985,204	+				+1.6
5,985,205	-				+0.9
5,985,205	-				-1.1
5,985,205	-				-0.6
5,985,205	-				+0.7
5,985,205	-				+0.4
5,985,205	-				-0.1
5,985,205	-				-1.3
5,985,293	+				-1.5
5,985,312	+				+0.4
5,985,312	+				-0.2
5,985,313	-				-0.4
5,985,333	+				+0.7
5,985,333	+				+1.3
5,985,334	-				+2.9
5,985,334	-				+0.2
5,985,334	-				-0.5
5,985,417	+				+0.9
5,985,417	+				+2.3
5,985,417	+				-1.1
5,985,417	+				-0.5
5,985,418	-				-0.7
5,985,418	-				-0.6
5,985,436	+				-0.1
5,985,436	+				+0.9
5,985,436	+				+0.7
5,985,437	-				-0.7
5,985,535	+				-0.4
5,985,535	+				-1.2
5,985,535	+				-1.9
5,985,535	+				-1.2
5,985,535	+				-0.0
5,985,535	+				-0.9
5,985,535	+				-0.7
5,985,535	+				+1.1
5,985,535	+				+0.5
5,985,535	+				-1.0
5,985,535	+				+1.3
5,985,535	+				+0.4
5,985,535	+				-1.3
5,985,535	+				-0.6
5,985,535	+				+1.4
5,985,536	-				+0.4
5,985,536	-				-1.3
5,985,536	-				-0.4
5,985,536	-				+0.1
5,985,536	-				-0.1
5,985,536	-				+0.9
5,985,536	-				+0.0
5,985,536	-				-0.1
5,985,536	-				-0.8
5,985,536	-				+0.7
5,985,536	-				-0.9
5,985,536	-				-2.7
5,985,536	-				+0.7
5,985,536	-				-0.4
5,985,536	-				+0.7
5,985,536	-				+0.4
5,985,536	-				-0.1
5,985,536	-				-1.3
5,985,536	-				-1.2
5,985,536	-				-1.7
5,985,581	+				+1.3
5,985,581	+				+0.6
5,985,581	+				-0.3
5,985,581	+				-0.3
5,985,581	+				-1.2
5,985,581	+				+0.3
5,985,581	+				+1.6
5,985,581	+				-2.1
5,985,581	+				+0.3
5,985,581	+				-0.6
5,985,581	+				+1.3
5,985,581	+				-0.1
5,985,581	+				+0.4
5,985,581	+				-0.5
5,985,581	+				-3.4
5,985,581	+				+0.6
5,985,581	+				-0.2
5,985,582	-				-0.1
5,985,582	-				-0.4
5,985,582	-				-1.6
5,985,582	-				-0.2
5,985,582	-				-1.7
5,985,582	-				-0.7
5,985,582	-				-0.4
5,985,582	-				-1.0
5,985,582	-				+0.3
5,985,582	-				-0.1
5,985,582	-				-0.1
5,985,587	-				-1.2
5,985,614	+				+0.3
5,985,614	+				+1.5
5,985,615	-				-0.7
5,985,615	-				-2.4
5,985,615	-				-0.0
5,985,856	+		Psyr_5043	0.59	-1.8
5,985,856	+		Psyr_5043	0.59	+0.2
5,985,856	+		Psyr_5043	0.59	+0.0
5,985,977	+		Psyr_5043	0.89	+0.7
5,985,977	+		Psyr_5043	0.89	+0.0
5,985,977	+		Psyr_5043	0.89	+0.1
5,985,977	+		Psyr_5043	0.89	-1.3
5,985,977	+		Psyr_5043	0.89	+0.1
5,985,978	-		Psyr_5043	0.89	-0.6
5,985,978	-		Psyr_5043	0.89	-0.3
5,985,978	-		Psyr_5043	0.89	+0.6
5,985,978	-		Psyr_5043	0.89	-1.3
5,985,978	-		Psyr_5043	0.89	+0.2
5,985,978	-		Psyr_5043	0.89	-0.7
5,985,978	-		Psyr_5043	0.89	-1.7
5,985,978	-		Psyr_5043	0.89	-0.1
5,985,978	-		Psyr_5043	0.89	-0.2
5,985,978	-		Psyr_5043	0.89	+0.2
5,986,018	+				+0.5
5,986,018	+				+0.1
5,986,019	-				+1.3
5,986,078	+				-0.9
5,986,078	+				+0.6
5,986,079	-				-0.2
5,986,079	-				+0.1
5,986,177	+				+1.4
5,986,177	+				-3.1
5,986,177	+				-0.2
5,986,178	-				+1.1
5,986,178	-				+0.3
5,986,178	-				+0.2
5,986,178	-				+1.0
5,986,236	-		Psyr_5044	0.14	-1.1
5,986,236	-		Psyr_5044	0.14	-1.3
5,986,236	-		Psyr_5044	0.14	+0.2
5,986,583	+		Psyr_5044	0.52	-0.4
5,986,583	+		Psyr_5044	0.52	-0.3
5,986,583	+		Psyr_5044	0.52	+0.5
5,986,583	+		Psyr_5044	0.52	-0.2
5,986,584	-		Psyr_5044	0.52	+0.3
5,986,605	+		Psyr_5044	0.54	-0.9
5,986,631	+		Psyr_5044	0.57	+0.5
5,986,631	+		Psyr_5044	0.57	+0.5
5,986,631	+		Psyr_5044	0.57	+0.0
5,986,631	+		Psyr_5044	0.57	+0.9
5,986,631	+		Psyr_5044	0.57	-1.2
5,986,631	+		Psyr_5044	0.57	-0.1
5,986,632	-		Psyr_5044	0.57	-2.9
5,986,632	-		Psyr_5044	0.57	+1.3
5,986,632	-		Psyr_5044	0.57	-0.4
5,986,632	-		Psyr_5044	0.57	-0.6
5,986,632	-		Psyr_5044	0.57	-0.4
5,986,650	+		Psyr_5044	0.59	-0.3
5,986,650	+		Psyr_5044	0.59	+0.9
5,986,650	+		Psyr_5044	0.59	+0.0
5,986,650	+		Psyr_5044	0.59	+0.1
5,986,650	+		Psyr_5044	0.59	-0.9
5,986,650	+		Psyr_5044	0.59	-0.2
5,986,651	-		Psyr_5044	0.59	+0.2
5,986,651	-		Psyr_5044	0.59	+0.4
5,986,651	-		Psyr_5044	0.59	-0.6
5,986,651	-		Psyr_5044	0.59	-0.9
5,986,651	-		Psyr_5044	0.59	+0.4
5,986,651	-		Psyr_5044	0.59	+1.1
5,986,688	+		Psyr_5044	0.63	+0.0
5,986,688	+		Psyr_5044	0.63	-0.2
5,986,688	+		Psyr_5044	0.63	-1.5
5,986,688	+		Psyr_5044	0.63	+0.3
5,986,689	-		Psyr_5044	0.63	+0.2
5,986,689	-		Psyr_5044	0.63	+0.0
5,986,689	-		Psyr_5044	0.63	-0.3
5,986,689	-		Psyr_5044	0.63	+0.5
5,986,689	-		Psyr_5044	0.63	-0.5
5,986,766	+		Psyr_5044	0.72	+0.1
5,986,766	+		Psyr_5044	0.72	+0.2
5,986,766	+		Psyr_5044	0.72	+0.7
5,986,766	+		Psyr_5044	0.72	-1.1
5,986,766	+		Psyr_5044	0.72	+0.9
5,986,766	+		Psyr_5044	0.72	+0.9
5,986,766	+		Psyr_5044	0.72	+0.6
5,986,766	+		Psyr_5044	0.72	+0.4
5,986,767	-		Psyr_5044	0.72	-0.5
5,986,767	-		Psyr_5044	0.72	-0.6
5,986,767	-		Psyr_5044	0.72	+0.4
5,986,767	-		Psyr_5044	0.72	-1.1
5,986,767	-		Psyr_5044	0.72	-0.1
5,986,767	-		Psyr_5044	0.72	+0.0
5,986,767	-		Psyr_5044	0.72	+0.5
5,987,002	+				-0.1
5,987,002	+				-0.1
5,987,002	+				-1.0
5,987,002	+				-1.3