Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0494

Experiment: MBOA 1.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0492 and Psyr_0493 overlap by 8 nucleotidesPsyr_0493 and Psyr_0494 are separated by 121 nucleotidesPsyr_0494 and Psyr_0495 are separated by 138 nucleotides Psyr_0492: Psyr_0492 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 528,991 to 534,969 _0492 Psyr_0493: Psyr_0493 - CheW-like protein, at 534,962 to 535,432 _0493 Psyr_0494: Psyr_0494 - Protein of unknown function UPF0061, at 535,554 to 537,017 _0494 Psyr_0495: Psyr_0495 - transcriptional regulator, GntR family, at 537,156 to 537,905 _0495 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1at 534.645 kb on + strandat 534.898 kb on + strandat 534.899 kb on - strandat 535.115 kb on + strand, within Psyr_0493at 535.313 kb on + strand, within Psyr_0493at 535.313 kb on + strand, within Psyr_0493at 535.313 kb on + strand, within Psyr_0493at 535.314 kb on - strand, within Psyr_0493at 535.314 kb on - strand, within Psyr_0493at 535.430 kb on + strandat 535.430 kb on + strandat 535.430 kb on + strandat 535.431 kb on - strandat 535.435 kb on - strandat 535.486 kb on + strandat 535.486 kb on + strandat 535.486 kb on + strandat 535.487 kb on - strandat 535.490 kb on + strandat 535.540 kb on - strandat 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.720 kb on + strand, within Psyr_0494at 535.721 kb on - strand, within Psyr_0494at 535.721 kb on - strand, within Psyr_0494at 535.735 kb on + strand, within Psyr_0494at 535.736 kb on - strand, within Psyr_0494at 535.736 kb on - strand, within Psyr_0494at 535.802 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.921 kb on + strand, within Psyr_0494at 535.922 kb on - strand, within Psyr_0494at 536.026 kb on + strand, within Psyr_0494at 536.027 kb on - strand, within Psyr_0494at 536.038 kb on + strand, within Psyr_0494at 536.241 kb on - strand, within Psyr_0494at 536.293 kb on + strand, within Psyr_0494at 536.294 kb on - strand, within Psyr_0494at 536.356 kb on + strand, within Psyr_0494at 536.443 kb on + strand, within Psyr_0494at 536.443 kb on + strand, within Psyr_0494at 536.444 kb on - strand, within Psyr_0494at 536.444 kb on - strand, within Psyr_0494at 536.452 kb on + strand, within Psyr_0494at 536.452 kb on + strand, within Psyr_0494at 536.453 kb on - strand, within Psyr_0494at 536.453 kb on - strand, within Psyr_0494at 536.453 kb on - strand, within Psyr_0494at 536.716 kb on + strand, within Psyr_0494at 536.717 kb on - strand, within Psyr_0494at 536.717 kb on - strand, within Psyr_0494at 536.717 kb on - strand, within Psyr_0494at 536.764 kb on + strand, within Psyr_0494at 536.765 kb on - strand, within Psyr_0494at 536.765 kb on - strand, within Psyr_0494at 536.788 kb on + strand, within Psyr_0494at 536.910 kb on + strandat 536.914 kb on - strandat 537.127 kb on + strandat 537.127 kb on + strandat 537.127 kb on + strandat 537.127 kb on + strandat 537.128 kb on - strandat 537.128 kb on - strandat 537.214 kb on + strandat 537.214 kb on + strandat 537.215 kb on - strandat 537.293 kb on - strand, within Psyr_0495at 537.364 kb on + strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.520 kb on + strand, within Psyr_0495at 537.520 kb on + strand, within Psyr_0495at 537.566 kb on - strand, within Psyr_0495at 537.569 kb on + strand, within Psyr_0495at 537.570 kb on - strand, within Psyr_0495at 537.651 kb on + strand, within Psyr_0495at 537.652 kb on - strand, within Psyr_0495at 537.674 kb on + strand, within Psyr_0495at 537.674 kb on + strand, within Psyr_0495at 537.803 kb on + strand, within Psyr_0495at 537.804 kb on - strand, within Psyr_0495at 537.821 kb on + strand, within Psyr_0495at 537.910 kb on + strandat 537.967 kb on - strandat 537.981 kb on + strandat 537.982 kb on - strandat 537.995 kb on - strandat 537.995 kb on - strandat 537.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 1.2 mM
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534,645 + -0.1
534,898 + +0.7
534,899 - +0.6
535,115 + Psyr_0493 0.32 -0.3
535,313 + Psyr_0493 0.75 -1.4
535,313 + Psyr_0493 0.75 -1.4
535,313 + Psyr_0493 0.75 -1.0
535,314 - Psyr_0493 0.75 -0.3
535,314 - Psyr_0493 0.75 -2.8
535,430 + -1.8
535,430 + -0.6
535,430 + +0.2
535,431 - -2.0
535,435 - -1.7
535,486 + -2.2
535,486 + -1.2
535,486 + +0.1
535,487 - +1.4
535,490 + -0.5
535,540 - -0.8
535,720 + Psyr_0494 0.11 +0.3
535,720 + Psyr_0494 0.11 -0.3
535,720 + Psyr_0494 0.11 +0.4
535,720 + Psyr_0494 0.11 -0.4
535,720 + Psyr_0494 0.11 +0.7
535,720 + Psyr_0494 0.11 -0.5
535,721 - Psyr_0494 0.11 +0.3
535,721 - Psyr_0494 0.11 +1.3
535,735 + Psyr_0494 0.12 -0.1
535,736 - Psyr_0494 0.12 +0.1
535,736 - Psyr_0494 0.12 +0.2
535,802 + Psyr_0494 0.17 -2.1
535,921 + Psyr_0494 0.25 -0.9
535,921 + Psyr_0494 0.25 -0.3
535,921 + Psyr_0494 0.25 +0.6
535,921 + Psyr_0494 0.25 +0.2
535,922 - Psyr_0494 0.25 +0.7
536,026 + Psyr_0494 0.32 -0.2
536,027 - Psyr_0494 0.32 -0.6
536,038 + Psyr_0494 0.33 -2.7
536,241 - Psyr_0494 0.47 +0.5
536,293 + Psyr_0494 0.50 -1.5
536,294 - Psyr_0494 0.51 -1.0
536,356 + Psyr_0494 0.55 +0.2
536,443 + Psyr_0494 0.61 +0.7
536,443 + Psyr_0494 0.61 -1.5
536,444 - Psyr_0494 0.61 -0.5
536,444 - Psyr_0494 0.61 +0.1
536,452 + Psyr_0494 0.61 -2.3
536,452 + Psyr_0494 0.61 +0.7
536,453 - Psyr_0494 0.61 +0.5
536,453 - Psyr_0494 0.61 +0.3
536,453 - Psyr_0494 0.61 +0.8
536,716 + Psyr_0494 0.79 +0.5
536,717 - Psyr_0494 0.79 -0.0
536,717 - Psyr_0494 0.79 -0.4
536,717 - Psyr_0494 0.79 -1.4
536,764 + Psyr_0494 0.83 +0.3
536,765 - Psyr_0494 0.83 +0.0
536,765 - Psyr_0494 0.83 +0.2
536,788 + Psyr_0494 0.84 +0.3
536,910 + -1.0
536,914 - +1.3
537,127 + -0.2
537,127 + -1.0
537,127 + +0.1
537,127 + +0.4
537,128 - -0.2
537,128 - +0.6
537,214 + -0.2
537,214 + +0.8
537,215 - -0.0
537,293 - Psyr_0495 0.18 -0.0
537,364 + Psyr_0495 0.28 -0.7
537,365 - Psyr_0495 0.28 -1.1
537,365 - Psyr_0495 0.28 -0.1
537,365 - Psyr_0495 0.28 -1.1
537,520 + Psyr_0495 0.49 -0.3
537,520 + Psyr_0495 0.49 +0.9
537,566 - Psyr_0495 0.55 +0.1
537,569 + Psyr_0495 0.55 -0.1
537,570 - Psyr_0495 0.55 +0.3
537,651 + Psyr_0495 0.66 -1.1
537,652 - Psyr_0495 0.66 +0.3
537,674 + Psyr_0495 0.69 -1.5
537,674 + Psyr_0495 0.69 +0.7
537,803 + Psyr_0495 0.86 -1.1
537,804 - Psyr_0495 0.86 -0.5
537,821 + Psyr_0495 0.89 +0.3
537,910 + +0.5
537,967 - +0.6
537,981 + +0.2
537,982 - -0.5
537,995 - -0.5
537,995 - +1.3
537,998 + -0.5

Or see this region's nucleotide sequence