Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4617 and Psyr_4618 are separated by 177 nucleotides Psyr_4618 and Psyr_4619 overlap by 4 nucleotides Psyr_4619 and Psyr_4620 are separated by 114 nucleotides
Psyr_4617: Psyr_4617 - ISPsy9, transposase OrfA, at 5,475,383 to 5,475,922
_4617
Psyr_4618: Psyr_4618 - regulatory protein, LuxR:Response regulator receiver, at 5,476,100 to 5,476,729
_4618
Psyr_4619: Psyr_4619 - multi-sensor signal transduction histidine kinase, at 5,476,726 to 5,478,738
_4619
Psyr_4620: Psyr_4620 - conserved hypothetical protein, at 5,478,853 to 5,479,857
_4620
Position (kb) 5476
5477
5478
5479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.359 kb on + strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.423 kb on + strand, within Psyr_4618 at 5476.568 kb on - strand, within Psyr_4618 at 5476.764 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5477.331 kb on + strand, within Psyr_4619 at 5477.383 kb on + strand, within Psyr_4619 at 5477.383 kb on + strand, within Psyr_4619 at 5477.384 kb on - strand, within Psyr_4619 at 5477.438 kb on + strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.639 kb on + strand, within Psyr_4619 at 5477.673 kb on - strand, within Psyr_4619 at 5478.241 kb on - strand, within Psyr_4619 at 5478.344 kb on + strand, within Psyr_4619 at 5478.345 kb on - strand, within Psyr_4619 at 5478.670 kb on - strand at 5478.711 kb on + strand at 5478.742 kb on + strand at 5478.742 kb on + strand at 5478.742 kb on + strand at 5478.742 kb on + strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.743 kb on - strand at 5478.818 kb on - strand at 5478.848 kb on - strand at 5478.859 kb on + strand at 5478.860 kb on - strand at 5478.902 kb on + strand at 5479.022 kb on + strand, within Psyr_4620 at 5479.023 kb on - strand, within Psyr_4620 at 5479.257 kb on + strand, within Psyr_4620 at 5479.617 kb on + strand, within Psyr_4620 at 5479.618 kb on - strand, within Psyr_4620 at 5479.664 kb on + strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.685 kb on - strand, within Psyr_4620 at 5479.685 kb on - strand, within Psyr_4620 at 5479.731 kb on + strand, within Psyr_4620
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 5,476,055 + -0.2 5,476,055 + +0.2 5,476,055 + -1.3 5,476,055 + -1.1 5,476,055 + -0.5 5,476,055 + -1.0 5,476,126 - -0.6 5,476,126 - +0.2 5,476,126 - -0.1 5,476,359 + Psyr_4618 0.41 -1.7 5,476,360 - Psyr_4618 0.41 -0.6 5,476,360 - Psyr_4618 0.41 -0.6 5,476,423 + Psyr_4618 0.51 -1.1 5,476,568 - Psyr_4618 0.74 -0.9 5,476,764 + +0.8 5,476,766 + -1.9 5,476,766 + -0.8 5,476,766 + +0.2 5,476,766 + -1.2 5,476,766 + -0.2 5,476,767 - +0.7 5,476,767 - -1.1 5,476,767 - +0.1 5,476,767 - -0.1 5,476,767 - -1.0 5,476,767 - -0.6 5,477,331 + Psyr_4619 0.30 +0.1 5,477,383 + Psyr_4619 0.33 -0.3 5,477,383 + Psyr_4619 0.33 -0.5 5,477,384 - Psyr_4619 0.33 -0.2 5,477,438 + Psyr_4619 0.35 +0.0 5,477,439 - Psyr_4619 0.35 +0.2 5,477,439 - Psyr_4619 0.35 +0.7 5,477,439 - Psyr_4619 0.35 -1.9 5,477,439 - Psyr_4619 0.35 +0.3 5,477,439 - Psyr_4619 0.35 -0.5 5,477,439 - Psyr_4619 0.35 -1.3 5,477,639 + Psyr_4619 0.45 +0.5 5,477,673 - Psyr_4619 0.47 +0.9 5,478,241 - Psyr_4619 0.75 +0.4 5,478,344 + Psyr_4619 0.80 +0.0 5,478,345 - Psyr_4619 0.80 -0.4 5,478,670 - -0.2 5,478,711 + +0.9 5,478,742 + +0.1 5,478,742 + +0.4 5,478,742 + +0.3 5,478,742 + -0.4 5,478,743 - +0.4 5,478,743 - +0.3 5,478,743 - +0.0 5,478,743 - +0.7 5,478,743 - -0.3 5,478,743 - -0.9 5,478,743 - -0.9 5,478,818 - +1.7 5,478,848 - -0.3 5,478,859 + +2.3 5,478,860 - +0.5 5,478,902 + +0.3 5,479,022 + Psyr_4620 0.17 -1.1 5,479,023 - Psyr_4620 0.17 -0.5 5,479,257 + Psyr_4620 0.40 +0.0 5,479,617 + Psyr_4620 0.76 -0.7 5,479,618 - Psyr_4620 0.76 -0.9 5,479,664 + Psyr_4620 0.81 -0.2 5,479,665 - Psyr_4620 0.81 +0.1 5,479,665 - Psyr_4620 0.81 +0.6 5,479,665 - Psyr_4620 0.81 -0.6 5,479,685 - Psyr_4620 0.83 +0.4 5,479,685 - Psyr_4620 0.83 -0.2 5,479,731 + Psyr_4620 0.87 +0.3
Or see this region's nucleotide sequence