Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4616 and Psyr_4617 overlap by 1 nucleotides Psyr_4617 and Psyr_4618 are separated by 177 nucleotides Psyr_4618 and Psyr_4619 overlap by 4 nucleotides
Psyr_4616: Psyr_4616 - Integrase, catalytic region, at 5,474,547 to 5,475,383
_4616
Psyr_4617: Psyr_4617 - ISPsy9, transposase OrfA, at 5,475,383 to 5,475,922
_4617
Psyr_4618: Psyr_4618 - regulatory protein, LuxR:Response regulator receiver, at 5,476,100 to 5,476,729
_4618
Psyr_4619: Psyr_4619 - multi-sensor signal transduction histidine kinase, at 5,476,726 to 5,478,738
_4619
Position (kb) 5475
5476 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5474.477 kb on + strand at 5474.477 kb on + strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.359 kb on + strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.423 kb on + strand, within Psyr_4618 at 5476.568 kb on - strand, within Psyr_4618 at 5476.764 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 5,474,477 + +0.9 5,474,477 + -0.1 5,474,478 - -3.3 5,474,478 - -0.2 5,474,478 - +0.2 5,474,478 - +0.2 5,474,478 - -1.0 5,474,478 - +0.1 5,474,478 - +1.2 5,476,055 + -0.2 5,476,055 + +0.2 5,476,055 + -1.3 5,476,055 + -1.1 5,476,055 + -0.5 5,476,055 + -1.0 5,476,126 - -0.6 5,476,126 - +0.2 5,476,126 - -0.1 5,476,359 + Psyr_4618 0.41 -1.7 5,476,360 - Psyr_4618 0.41 -0.6 5,476,360 - Psyr_4618 0.41 -0.6 5,476,423 + Psyr_4618 0.51 -1.1 5,476,568 - Psyr_4618 0.74 -0.9 5,476,764 + +0.8 5,476,766 + -1.9 5,476,766 + -0.8 5,476,766 + +0.2 5,476,766 + -1.2 5,476,766 + -0.2 5,476,767 - +0.7 5,476,767 - -1.1 5,476,767 - +0.1 5,476,767 - -0.1 5,476,767 - -1.0 5,476,767 - -0.6
Or see this region's nucleotide sequence