Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4615 and Psyr_4616 are separated by 425 nucleotides Psyr_4616 and Psyr_4617 overlap by 1 nucleotides Psyr_4617 and Psyr_4618 are separated by 177 nucleotides
Psyr_4615: Psyr_4615 - Spermidine/putrescine ABC transporter ATP-binding subunit, at 5,472,997 to 5,474,121
_4615
Psyr_4616: Psyr_4616 - Integrase, catalytic region, at 5,474,547 to 5,475,383
_4616
Psyr_4617: Psyr_4617 - ISPsy9, transposase OrfA, at 5,475,383 to 5,475,922
_4617
Psyr_4618: Psyr_4618 - regulatory protein, LuxR:Response regulator receiver, at 5,476,100 to 5,476,729
_4618
Position (kb) 5474
5475
5476 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5473.713 kb on + strand, within Psyr_4615 at 5473.835 kb on + strand, within Psyr_4615 at 5473.835 kb on + strand, within Psyr_4615 at 5473.835 kb on + strand, within Psyr_4615 at 5473.836 kb on - strand, within Psyr_4615 at 5473.836 kb on - strand, within Psyr_4615 at 5473.836 kb on - strand, within Psyr_4615 at 5473.836 kb on - strand, within Psyr_4615 at 5473.866 kb on + strand, within Psyr_4615 at 5474.051 kb on + strand at 5474.051 kb on + strand at 5474.052 kb on - strand at 5474.052 kb on - strand at 5474.159 kb on + strand at 5474.159 kb on + strand at 5474.160 kb on - strand at 5474.263 kb on + strand at 5474.264 kb on - strand at 5474.354 kb on + strand at 5474.354 kb on + strand at 5474.477 kb on + strand at 5474.477 kb on + strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5474.478 kb on - strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.359 kb on + strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 5,473,713 + Psyr_4615 0.64 -0.3 5,473,835 + Psyr_4615 0.74 +0.2 5,473,835 + Psyr_4615 0.74 +0.1 5,473,835 + Psyr_4615 0.74 +0.1 5,473,836 - Psyr_4615 0.75 +0.2 5,473,836 - Psyr_4615 0.75 -0.2 5,473,836 - Psyr_4615 0.75 +0.1 5,473,836 - Psyr_4615 0.75 -1.6 5,473,866 + Psyr_4615 0.77 +0.1 5,474,051 + +0.1 5,474,051 + -1.8 5,474,052 - +0.6 5,474,052 - -0.8 5,474,159 + -0.6 5,474,159 + +1.5 5,474,160 - +0.1 5,474,263 + +0.4 5,474,264 - -0.6 5,474,354 + -0.1 5,474,354 + +0.9 5,474,477 + +0.9 5,474,477 + -0.1 5,474,478 - -3.3 5,474,478 - -0.2 5,474,478 - +0.2 5,474,478 - +0.2 5,474,478 - -1.0 5,474,478 - +0.1 5,474,478 - +1.2 5,476,055 + -0.2 5,476,055 + +0.2 5,476,055 + -1.3 5,476,055 + -1.1 5,476,055 + -0.5 5,476,055 + -1.0 5,476,126 - -0.6 5,476,126 - +0.2 5,476,126 - -0.1 5,476,359 + Psyr_4618 0.41 -1.7 5,476,360 - Psyr_4618 0.41 -0.6 5,476,360 - Psyr_4618 0.41 -0.6
Or see this region's nucleotide sequence