Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0500

Experiment: MBOA 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0499 and Psyr_0500 overlap by 4 nucleotidesPsyr_0500 and Psyr_0501 are separated by 58 nucleotides Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498 _0499 Psyr_0500: Psyr_0500 - biotin carboxyl carrier protein / biotin carboxylase, at 542,495 to 544,228 _0500 Psyr_0501: Psyr_0501 - MscS Mechanosensitive ion channel, at 544,287 to 547,691 _0501 Position (kb) 542 543 544 545Strain fitness (log2 ratio) -2 -1 0 1at 541.569 kb on + strand, within Psyr_0499at 541.569 kb on + strand, within Psyr_0499at 541.570 kb on - strand, within Psyr_0499at 541.848 kb on + strand, within Psyr_0499at 541.849 kb on - strand, within Psyr_0499at 541.865 kb on - strand, within Psyr_0499at 541.917 kb on + strand, within Psyr_0499at 541.917 kb on + strand, within Psyr_0499at 541.918 kb on - strand, within Psyr_0499at 541.918 kb on - strand, within Psyr_0499at 541.918 kb on - strand, within Psyr_0499at 542.385 kb on + strandat 542.385 kb on + strandat 542.385 kb on + strandat 542.385 kb on + strandat 542.386 kb on - strandat 542.539 kb on + strandat 542.669 kb on + strand, within Psyr_0500at 542.669 kb on + strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.854 kb on + strand, within Psyr_0500at 542.855 kb on - strand, within Psyr_0500at 542.855 kb on - strand, within Psyr_0500at 542.855 kb on - strand, within Psyr_0500at 543.227 kb on + strand, within Psyr_0500at 543.227 kb on + strand, within Psyr_0500at 543.228 kb on - strand, within Psyr_0500at 543.293 kb on + strand, within Psyr_0500at 543.294 kb on - strand, within Psyr_0500at 543.294 kb on - strand, within Psyr_0500at 543.550 kb on + strand, within Psyr_0500at 543.551 kb on - strand, within Psyr_0500at 543.551 kb on - strand, within Psyr_0500at 543.558 kb on + strand, within Psyr_0500at 543.793 kb on + strand, within Psyr_0500at 543.794 kb on - strand, within Psyr_0500at 544.188 kb on - strandat 544.343 kb on + strandat 544.420 kb on + strandat 544.447 kb on + strandat 544.447 kb on + strandat 544.447 kb on + strandat 544.447 kb on + strandat 544.448 kb on - strandat 544.448 kb on - strandat 544.448 kb on - strandat 544.554 kb on + strandat 544.555 kb on - strandat 544.555 kb on - strandat 544.555 kb on - strandat 544.555 kb on - strandat 544.555 kb on - strandat 544.584 kb on - strandat 544.606 kb on + strandat 544.659 kb on + strand, within Psyr_0501at 544.659 kb on + strand, within Psyr_0501at 544.660 kb on - strand, within Psyr_0501at 545.057 kb on - strand, within Psyr_0501at 545.057 kb on - strand, within Psyr_0501at 545.080 kb on + strand, within Psyr_0501at 545.121 kb on + strand, within Psyr_0501at 545.122 kb on - strand, within Psyr_0501

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 0.5 mM
remove
541,569 + Psyr_0499 0.42 +1.4
541,569 + Psyr_0499 0.42 -0.5
541,570 - Psyr_0499 0.42 +0.1
541,848 + Psyr_0499 0.59 -0.7
541,849 - Psyr_0499 0.60 -0.9
541,865 - Psyr_0499 0.60 -1.0
541,917 + Psyr_0499 0.64 +0.3
541,917 + Psyr_0499 0.64 +0.5
541,918 - Psyr_0499 0.64 -1.3
541,918 - Psyr_0499 0.64 -0.5
541,918 - Psyr_0499 0.64 +0.5
542,385 + +0.1
542,385 + -0.1
542,385 + +0.4
542,385 + -1.7
542,386 - +1.3
542,539 + -0.3
542,669 + Psyr_0500 0.10 -0.1
542,669 + Psyr_0500 0.10 +0.1
542,670 - Psyr_0500 0.10 +0.6
542,670 - Psyr_0500 0.10 -1.2
542,670 - Psyr_0500 0.10 +0.6
542,670 - Psyr_0500 0.10 +1.1
542,670 - Psyr_0500 0.10 +0.7
542,670 - Psyr_0500 0.10 +0.7
542,854 + Psyr_0500 0.21 +0.3
542,855 - Psyr_0500 0.21 -0.1
542,855 - Psyr_0500 0.21 -1.1
542,855 - Psyr_0500 0.21 -0.0
543,227 + Psyr_0500 0.42 -0.3
543,227 + Psyr_0500 0.42 -0.3
543,228 - Psyr_0500 0.42 +1.1
543,293 + Psyr_0500 0.46 -0.3
543,294 - Psyr_0500 0.46 -1.1
543,294 - Psyr_0500 0.46 +0.4
543,550 + Psyr_0500 0.61 -0.2
543,551 - Psyr_0500 0.61 -0.3
543,551 - Psyr_0500 0.61 -1.5
543,558 + Psyr_0500 0.61 +0.7
543,793 + Psyr_0500 0.75 +0.4
543,794 - Psyr_0500 0.75 +0.8
544,188 - +0.1
544,343 + -0.3
544,420 + +1.1
544,447 + -0.6
544,447 + -0.5
544,447 + -0.6
544,447 + -0.3
544,448 - -0.4
544,448 - +0.8
544,448 - +0.0
544,554 + -0.4
544,555 - +0.7
544,555 - +0.0
544,555 - +0.9
544,555 - -0.3
544,555 - -1.6
544,584 - +1.5
544,606 + -0.1
544,659 + Psyr_0501 0.11 -0.4
544,659 + Psyr_0501 0.11 +0.6
544,660 - Psyr_0501 0.11 +0.0
545,057 - Psyr_0501 0.23 +0.4
545,057 - Psyr_0501 0.23 -0.3
545,080 + Psyr_0501 0.23 +0.1
545,121 + Psyr_0501 0.24 -0.2
545,122 - Psyr_0501 0.25 -1.9

Or see this region's nucleotide sequence