Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0161 and Psyr_0162 are separated by 441 nucleotides Psyr_0162 and Psyr_0163 are separated by 130 nucleotides Psyr_0163 and Psyr_0164 are separated by 9 nucleotides
Psyr_0161: Psyr_0161 - Protein of unknown function DUF861, at 175,914 to 176,627
_0161
Psyr_0162: Psyr_0162 - hypothetical protein, at 177,069 to 177,518
_0162
Psyr_0163: Psyr_0163 - conserved hypothetical protein, at 177,649 to 178,356
_0163
Psyr_0164: Psyr_0164 - conserved hypothetical protein, at 178,366 to 179,082
_0164
Position (kb) 177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.097 kb on + strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.216 kb on + strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.599 kb on - strand at 176.599 kb on - strand at 176.614 kb on - strand at 176.614 kb on - strand at 176.636 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.721 kb on - strand at 176.802 kb on - strand at 176.873 kb on + strand at 176.906 kb on + strand at 176.906 kb on + strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.988 kb on + strand at 177.046 kb on - strand at 177.049 kb on + strand at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.195 kb on - strand, within Psyr_0162 at 177.195 kb on - strand, within Psyr_0162 at 177.282 kb on + strand, within Psyr_0162 at 177.282 kb on + strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.284 kb on + strand, within Psyr_0162 at 177.285 kb on - strand, within Psyr_0162 at 177.285 kb on - strand, within Psyr_0162 at 177.318 kb on + strand, within Psyr_0162 at 177.318 kb on + strand, within Psyr_0162 at 177.319 kb on - strand, within Psyr_0162 at 177.334 kb on - strand, within Psyr_0162 at 177.334 kb on - strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.377 kb on - strand, within Psyr_0162 at 177.377 kb on - strand, within Psyr_0162 at 177.422 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.483 kb on - strand at 177.516 kb on + strand at 177.516 kb on + strand at 177.537 kb on - strand at 177.544 kb on + strand at 177.545 kb on - strand at 177.573 kb on + strand at 177.573 kb on + strand at 177.574 kb on - strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.604 kb on - strand at 177.610 kb on + strand at 177.610 kb on + strand at 177.611 kb on - strand at 177.611 kb on - strand at 177.678 kb on + strand at 177.678 kb on + strand at 177.678 kb on + strand at 177.679 kb on - strand at 177.696 kb on - strand at 177.743 kb on + strand, within Psyr_0163 at 177.743 kb on + strand, within Psyr_0163 at 177.743 kb on + strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.775 kb on - strand, within Psyr_0163 at 177.840 kb on + strand, within Psyr_0163 at 177.848 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.913 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.089 kb on + strand, within Psyr_0163 at 178.099 kb on - strand, within Psyr_0163 at 178.099 kb on - strand, within Psyr_0163 at 178.143 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.174 kb on + strand, within Psyr_0163 at 178.175 kb on - strand, within Psyr_0163 at 178.271 kb on - strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.380 kb on + strand at 178.380 kb on + strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.475 kb on + strand, within Psyr_0164 at 178.475 kb on + strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 176,097 + Psyr_0161 0.26 +1.7 176,104 - Psyr_0161 0.27 -1.9 176,104 - Psyr_0161 0.27 +0.4 176,212 + Psyr_0161 0.42 -0.6 176,212 + Psyr_0161 0.42 +3.3 176,212 + Psyr_0161 0.42 +0.0 176,212 + Psyr_0161 0.42 +0.8 176,212 + Psyr_0161 0.42 +0.3 176,212 + Psyr_0161 0.42 -1.5 176,212 + Psyr_0161 0.42 -0.5 176,212 + Psyr_0161 0.42 +0.8 176,212 + Psyr_0161 0.42 +1.1 176,212 + Psyr_0161 0.42 -0.1 176,212 + Psyr_0161 0.42 -1.2 176,212 + Psyr_0161 0.42 -1.0 176,212 + Psyr_0161 0.42 +0.1 176,213 - Psyr_0161 0.42 +0.8 176,213 - Psyr_0161 0.42 -0.3 176,213 - Psyr_0161 0.42 -0.1 176,213 - Psyr_0161 0.42 +1.3 176,213 - Psyr_0161 0.42 +0.8 176,213 - Psyr_0161 0.42 +1.3 176,216 + Psyr_0161 0.42 +0.0 176,217 - Psyr_0161 0.42 -0.7 176,217 - Psyr_0161 0.42 -0.2 176,598 + -0.6 176,598 + -0.2 176,598 + +0.3 176,598 + -1.2 176,598 + +0.3 176,598 + +0.3 176,598 + +0.6 176,599 - +1.3 176,599 - -0.5 176,614 - -0.3 176,614 - +0.3 176,636 + +0.2 176,683 + -0.3 176,683 + -0.9 176,684 - +0.4 176,684 - +0.1 176,684 - +0.4 176,721 - +3.3 176,802 - -0.0 176,873 + -0.7 176,906 + +0.7 176,906 + -0.2 176,907 - +0.3 176,907 - -0.2 176,907 - -0.2 176,907 - +0.0 176,946 + +1.1 176,946 + +2.0 176,946 + -1.7 176,946 + +1.3 176,947 - -0.4 176,947 - -0.0 176,947 - +1.6 176,947 - -2.3 176,988 + -0.9 177,046 - +1.3 177,049 + -0.7 177,194 + Psyr_0162 0.28 -0.8 177,194 + Psyr_0162 0.28 +0.3 177,194 + Psyr_0162 0.28 -0.5 177,194 + Psyr_0162 0.28 +1.1 177,194 + Psyr_0162 0.28 +0.3 177,194 + Psyr_0162 0.28 +0.7 177,195 - Psyr_0162 0.28 -0.5 177,195 - Psyr_0162 0.28 -0.7 177,282 + Psyr_0162 0.47 +0.8 177,282 + Psyr_0162 0.47 -0.3 177,283 - Psyr_0162 0.48 -0.1 177,283 - Psyr_0162 0.48 -0.1 177,283 - Psyr_0162 0.48 +0.4 177,284 + Psyr_0162 0.48 -2.6 177,285 - Psyr_0162 0.48 +0.4 177,285 - Psyr_0162 0.48 +0.1 177,318 + Psyr_0162 0.55 -0.2 177,318 + Psyr_0162 0.55 +0.4 177,319 - Psyr_0162 0.56 +1.6 177,334 - Psyr_0162 0.59 +0.7 177,334 - Psyr_0162 0.59 -0.3 177,352 + Psyr_0162 0.63 +0.3 177,352 + Psyr_0162 0.63 +0.4 177,352 + Psyr_0162 0.63 -0.1 177,352 + Psyr_0162 0.63 -1.1 177,352 + Psyr_0162 0.63 -1.5 177,352 + Psyr_0162 0.63 -0.1 177,352 + Psyr_0162 0.63 +0.7 177,352 + Psyr_0162 0.63 +1.1 177,352 + Psyr_0162 0.63 -0.1 177,352 + Psyr_0162 0.63 +0.4 177,352 + Psyr_0162 0.63 +0.6 177,352 + Psyr_0162 0.63 +1.3 177,353 - Psyr_0162 0.63 +1.0 177,353 - Psyr_0162 0.63 +0.3 177,353 - Psyr_0162 0.63 -0.0 177,353 - Psyr_0162 0.63 +1.0 177,353 - Psyr_0162 0.63 +1.3 177,377 - Psyr_0162 0.68 +0.3 177,377 - Psyr_0162 0.68 -1.9 177,422 + Psyr_0162 0.78 -0.1 177,458 + Psyr_0162 0.86 -0.3 177,458 + Psyr_0162 0.86 +0.3 177,458 + Psyr_0162 0.86 +0.1 177,459 - Psyr_0162 0.87 +0.1 177,459 - Psyr_0162 0.87 -1.9 177,459 - Psyr_0162 0.87 +1.0 177,459 - Psyr_0162 0.87 -0.5 177,459 - Psyr_0162 0.87 +1.7 177,483 - +1.3 177,516 + -0.4 177,516 + +0.1 177,537 - +0.1 177,544 + -0.1 177,545 - -0.1 177,573 + +0.9 177,573 + +0.5 177,574 - -0.7 177,599 + -0.3 177,599 + +0.9 177,599 + +0.2 177,599 + -1.1 177,599 + -0.7 177,599 + -0.0 177,599 + +0.1 177,599 + +1.1 177,599 + -3.1 177,599 + +1.2 177,600 - -3.1 177,600 - +0.1 177,600 - -0.7 177,600 - +0.3 177,600 - +1.4 177,600 - -1.2 177,604 - +1.4 177,610 + +1.3 177,610 + +0.7 177,611 - +0.2 177,611 - +0.1 177,678 + +1.3 177,678 + +1.1 177,678 + -0.1 177,679 - -0.7 177,696 - +0.8 177,743 + Psyr_0163 0.13 -0.4 177,743 + Psyr_0163 0.13 -0.9 177,743 + Psyr_0163 0.13 -0.2 177,744 - Psyr_0163 0.13 +0.6 177,744 - Psyr_0163 0.13 -0.3 177,744 - Psyr_0163 0.13 -0.7 177,744 - Psyr_0163 0.13 -0.9 177,747 + Psyr_0163 0.14 -0.4 177,747 + Psyr_0163 0.14 +0.5 177,747 + Psyr_0163 0.14 +0.6 177,747 + Psyr_0163 0.14 +0.5 177,747 + Psyr_0163 0.14 +0.4 177,748 - Psyr_0163 0.14 -0.3 177,748 - Psyr_0163 0.14 +0.3 177,748 - Psyr_0163 0.14 -2.7 177,748 - Psyr_0163 0.14 -0.7 177,748 - Psyr_0163 0.14 +1.7 177,775 - Psyr_0163 0.18 +0.4 177,840 + Psyr_0163 0.27 +0.8 177,848 + Psyr_0163 0.28 +0.3 177,910 + Psyr_0163 0.37 -0.7 177,910 + Psyr_0163 0.37 +0.2 177,910 + Psyr_0163 0.37 +0.9 177,910 + Psyr_0163 0.37 +0.1 177,910 + Psyr_0163 0.37 -1.5 177,911 - Psyr_0163 0.37 +0.2 177,911 - Psyr_0163 0.37 -0.4 177,911 - Psyr_0163 0.37 +1.1 177,911 - Psyr_0163 0.37 -0.5 177,911 - Psyr_0163 0.37 -0.2 177,913 + Psyr_0163 0.37 +0.8 178,063 + Psyr_0163 0.58 +0.9 178,063 + Psyr_0163 0.58 -0.4 178,063 + Psyr_0163 0.58 +0.2 178,063 + Psyr_0163 0.58 -1.7 178,063 + Psyr_0163 0.58 +0.4 178,063 + Psyr_0163 0.58 +1.8 178,064 - Psyr_0163 0.59 -1.7 178,064 - Psyr_0163 0.59 +0.9 178,064 - Psyr_0163 0.59 +0.2 178,064 - Psyr_0163 0.59 -0.2 178,064 - Psyr_0163 0.59 -0.8 178,089 + Psyr_0163 0.62 -1.0 178,099 - Psyr_0163 0.64 -0.3 178,099 - Psyr_0163 0.64 +0.4 178,143 + Psyr_0163 0.70 +0.7 178,162 + Psyr_0163 0.72 +0.0 178,162 + Psyr_0163 0.72 +0.7 178,163 - Psyr_0163 0.73 -0.2 178,163 - Psyr_0163 0.73 -0.8 178,163 - Psyr_0163 0.73 +0.6 178,174 + Psyr_0163 0.74 -0.3 178,175 - Psyr_0163 0.74 +0.6 178,271 - Psyr_0163 0.88 -1.7 178,284 + Psyr_0163 0.90 +0.4 178,284 + Psyr_0163 0.90 +0.4 178,284 + Psyr_0163 0.90 -0.0 178,284 + Psyr_0163 0.90 +0.5 178,284 + Psyr_0163 0.90 +0.4 178,284 + Psyr_0163 0.90 +0.1 178,284 + Psyr_0163 0.90 -0.4 178,284 + Psyr_0163 0.90 +0.3 178,285 - Psyr_0163 0.90 -1.0 178,285 - Psyr_0163 0.90 +0.1 178,285 - Psyr_0163 0.90 -0.5 178,285 - Psyr_0163 0.90 +0.1 178,285 - Psyr_0163 0.90 -1.1 178,285 - Psyr_0163 0.90 +1.0 178,285 - Psyr_0163 0.90 +1.6 178,285 - Psyr_0163 0.90 -0.3 178,285 - Psyr_0163 0.90 -0.6 178,285 - Psyr_0163 0.90 -0.0 178,285 - Psyr_0163 0.90 -0.1 178,285 - Psyr_0163 0.90 +0.0 178,285 - Psyr_0163 0.90 +0.5 178,365 + -0.5 178,365 + -0.6 178,365 + -1.2 178,365 + +1.8 178,365 + -0.3 178,365 + +0.1 178,366 - -2.5 178,366 - +1.1 178,366 - +0.0 178,366 - -1.4 178,366 - -0.0 178,366 - -0.0 178,366 - +0.9 178,366 - -0.7 178,366 - +0.5 178,366 - +1.3 178,366 - +0.5 178,366 - +0.8 178,380 + -1.9 178,380 + -0.6 178,381 - +0.8 178,381 - +1.4 178,381 - +0.8 178,381 - -0.5 178,475 + Psyr_0164 0.15 +2.1 178,475 + Psyr_0164 0.15 -1.5 178,476 - Psyr_0164 0.15 -0.7 178,476 - Psyr_0164 0.15 +0.0 178,476 - Psyr_0164 0.15 +0.2 178,476 - Psyr_0164 0.15 -0.5 178,476 - Psyr_0164 0.15 -1.3
Or see this region's nucleotide sequence