Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4832 and Psyr_4833 are separated by 54 nucleotides Psyr_4833 and Psyr_4834 are separated by 102 nucleotides
Psyr_4832: Psyr_4832 - histidine ammonia-lyase, at 5,734,563 to 5,736,104
_4832
Psyr_4833: Psyr_4833 - histidine ammonia-lyase, at 5,736,159 to 5,737,706
_4833
Psyr_4834: Psyr_4834 - histidine:proton symporter, AAT family, at 5,737,809 to 5,739,185
_4834
Position (kb) 5736
5737
5738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5735.721 kb on + strand, within Psyr_4832 at 5735.721 kb on + strand, within Psyr_4832 at 5735.722 kb on - strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.988 kb on + strand at 5735.989 kb on - strand at 5736.100 kb on + strand at 5736.100 kb on + strand at 5736.100 kb on + strand at 5736.101 kb on - strand at 5736.101 kb on - strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.113 kb on + strand at 5736.113 kb on + strand at 5736.114 kb on - strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.150 kb on - strand at 5736.150 kb on - strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.232 kb on - strand at 5736.232 kb on - strand at 5736.576 kb on - strand, within Psyr_4833 at 5736.576 kb on - strand, within Psyr_4833 at 5736.656 kb on + strand, within Psyr_4833 at 5736.657 kb on - strand, within Psyr_4833 at 5737.495 kb on + strand, within Psyr_4833 at 5737.496 kb on - strand, within Psyr_4833 at 5737.496 kb on - strand, within Psyr_4833 at 5737.600 kb on - strand at 5737.600 kb on - strand at 5737.785 kb on + strand at 5737.786 kb on - strand at 5737.886 kb on + strand at 5737.899 kb on + strand at 5737.900 kb on - strand at 5737.939 kb on + strand at 5737.940 kb on - strand at 5737.950 kb on + strand, within Psyr_4834 at 5737.951 kb on - strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5738.040 kb on + strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.091 kb on + strand, within Psyr_4834 at 5738.091 kb on + strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.554 kb on - strand, within Psyr_4834 at 5738.554 kb on - strand, within Psyr_4834 at 5738.586 kb on + strand, within Psyr_4834
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 5,735,721 + Psyr_4832 0.75 +1.7 5,735,721 + Psyr_4832 0.75 -1.6 5,735,722 - Psyr_4832 0.75 -1.0 5,735,784 + Psyr_4832 0.79 +0.0 5,735,784 + Psyr_4832 0.79 +1.0 5,735,784 + Psyr_4832 0.79 +0.2 5,735,784 + Psyr_4832 0.79 +1.5 5,735,784 + Psyr_4832 0.79 -0.3 5,735,784 + Psyr_4832 0.79 -1.2 5,735,784 + Psyr_4832 0.79 -0.8 5,735,784 + Psyr_4832 0.79 +0.2 5,735,784 + Psyr_4832 0.79 -0.8 5,735,784 + Psyr_4832 0.79 -0.3 5,735,784 + Psyr_4832 0.79 +2.1 5,735,785 - Psyr_4832 0.79 +0.1 5,735,785 - Psyr_4832 0.79 -0.6 5,735,785 - Psyr_4832 0.79 +0.4 5,735,785 - Psyr_4832 0.79 -0.9 5,735,785 - Psyr_4832 0.79 -0.2 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 +0.8 5,735,785 - Psyr_4832 0.79 -0.0 5,735,785 - Psyr_4832 0.79 -1.9 5,735,785 - Psyr_4832 0.79 +0.8 5,735,785 - Psyr_4832 0.79 +0.0 5,735,785 - Psyr_4832 0.79 +0.7 5,735,785 - Psyr_4832 0.79 -1.1 5,735,785 - Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 +0.7 5,735,785 - Psyr_4832 0.79 +0.8 5,735,785 - Psyr_4832 0.79 +0.6 5,735,785 - Psyr_4832 0.79 -0.3 5,735,785 - Psyr_4832 0.79 -1.2 5,735,785 - Psyr_4832 0.79 -0.4 5,735,785 - Psyr_4832 0.79 -1.4 5,735,988 + +0.4 5,735,989 - -0.4 5,736,100 + +0.2 5,736,100 + -1.9 5,736,100 + +0.1 5,736,101 - -0.3 5,736,101 - +0.3 5,736,102 + -0.2 5,736,102 + -1.3 5,736,102 + -0.3 5,736,102 + +0.7 5,736,102 + +0.3 5,736,103 - -1.7 5,736,103 - -0.8 5,736,103 - -0.4 5,736,103 - -1.1 5,736,103 - -0.1 5,736,113 + +0.5 5,736,113 + -1.0 5,736,114 - +0.1 5,736,139 + -1.2 5,736,139 + -1.1 5,736,139 + +0.9 5,736,139 + +1.8 5,736,139 + -0.4 5,736,140 - +0.4 5,736,140 - -0.2 5,736,140 - -1.0 5,736,140 - +0.7 5,736,140 - +0.2 5,736,140 - +1.0 5,736,150 - -0.3 5,736,150 - -0.4 5,736,169 + +0.3 5,736,169 + -0.4 5,736,169 + -0.9 5,736,169 + -0.4 5,736,170 - +0.1 5,736,170 - -0.4 5,736,170 - +0.4 5,736,231 + -0.8 5,736,231 + +0.7 5,736,231 + +1.3 5,736,232 - +0.4 5,736,232 - -0.0 5,736,576 - Psyr_4833 0.27 +0.2 5,736,576 - Psyr_4833 0.27 +0.7 5,736,656 + Psyr_4833 0.32 -0.4 5,736,657 - Psyr_4833 0.32 +0.8 5,737,495 + Psyr_4833 0.86 +0.2 5,737,496 - Psyr_4833 0.86 -0.2 5,737,496 - Psyr_4833 0.86 +0.6 5,737,600 - +1.0 5,737,600 - -0.5 5,737,785 + +0.4 5,737,786 - +0.9 5,737,886 + +0.0 5,737,899 + -1.2 5,737,900 - -0.2 5,737,939 + -0.2 5,737,940 - -0.1 5,737,950 + Psyr_4834 0.10 -2.3 5,737,951 - Psyr_4834 0.10 -0.2 5,737,974 + Psyr_4834 0.12 +0.8 5,737,974 + Psyr_4834 0.12 +0.0 5,737,974 + Psyr_4834 0.12 +1.6 5,737,974 + Psyr_4834 0.12 -0.3 5,737,974 + Psyr_4834 0.12 -2.2 5,737,974 + Psyr_4834 0.12 -1.0 5,737,974 + Psyr_4834 0.12 +0.7 5,737,974 + Psyr_4834 0.12 +0.5 5,737,975 - Psyr_4834 0.12 +0.5 5,737,975 - Psyr_4834 0.12 +1.1 5,737,975 - Psyr_4834 0.12 +0.7 5,737,975 - Psyr_4834 0.12 -1.0 5,737,975 - Psyr_4834 0.12 +0.4 5,738,040 + Psyr_4834 0.17 +1.4 5,738,053 - Psyr_4834 0.18 -0.5 5,738,053 - Psyr_4834 0.18 -0.6 5,738,053 - Psyr_4834 0.18 +0.3 5,738,053 - Psyr_4834 0.18 -1.9 5,738,091 + Psyr_4834 0.20 +0.0 5,738,091 + Psyr_4834 0.20 +0.3 5,738,092 - Psyr_4834 0.21 +0.7 5,738,092 - Psyr_4834 0.21 +1.6 5,738,092 - Psyr_4834 0.21 +1.7 5,738,092 - Psyr_4834 0.21 -0.7 5,738,092 - Psyr_4834 0.21 +1.1 5,738,145 + Psyr_4834 0.24 -0.2 5,738,145 + Psyr_4834 0.24 +2.1 5,738,145 + Psyr_4834 0.24 +0.4 5,738,145 + Psyr_4834 0.24 -1.9 5,738,145 + Psyr_4834 0.24 -1.1 5,738,145 + Psyr_4834 0.24 +0.3 5,738,145 + Psyr_4834 0.24 +0.1 5,738,145 + Psyr_4834 0.24 +0.5 5,738,145 + Psyr_4834 0.24 +1.1 5,738,145 + Psyr_4834 0.24 -0.0 5,738,145 + Psyr_4834 0.24 -0.3 5,738,145 + Psyr_4834 0.24 -1.6 5,738,145 + Psyr_4834 0.24 +0.2 5,738,145 + Psyr_4834 0.24 -0.2 5,738,146 - Psyr_4834 0.24 -0.4 5,738,146 - Psyr_4834 0.24 +1.1 5,738,146 - Psyr_4834 0.24 -1.0 5,738,146 - Psyr_4834 0.24 +0.4 5,738,146 - Psyr_4834 0.24 +0.3 5,738,146 - Psyr_4834 0.24 -2.4 5,738,146 - Psyr_4834 0.24 -0.4 5,738,146 - Psyr_4834 0.24 +0.4 5,738,553 + Psyr_4834 0.54 -0.4 5,738,553 + Psyr_4834 0.54 +0.4 5,738,553 + Psyr_4834 0.54 +0.0 5,738,553 + Psyr_4834 0.54 +0.2 5,738,553 + Psyr_4834 0.54 -1.9 5,738,554 - Psyr_4834 0.54 -2.3 5,738,554 - Psyr_4834 0.54 +0.8 5,738,586 + Psyr_4834 0.56 -1.0
Or see this region's nucleotide sequence