Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1070

Experiment: MBOA 0.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 0.5 mM
1,211,416	+		Psyr_1067	0.76	+0.3
1,211,416	+		Psyr_1067	0.76	-0.4
1,211,417	-		Psyr_1067	0.76	-1.1
1,211,417	-		Psyr_1067	0.76	+2.9
1,211,422	-		Psyr_1067	0.77	-0.2
1,211,879	+		Psyr_1069	0.23	+0.3
1,211,879	+		Psyr_1069	0.23	-1.4
1,211,879	+		Psyr_1069	0.23	-2.0
1,211,879	+		Psyr_1069	0.23	-0.4
1,211,880	-		Psyr_1069	0.23	-0.4
1,211,880	-		Psyr_1069	0.23	-0.4
1,211,880	-		Psyr_1069	0.23	-0.8
1,212,001	-		Psyr_1069	0.50	-0.6
1,212,013	-		Psyr_1069	0.52	-1.1
1,212,224	+				-1.0
1,212,224	+				+0.2
1,212,224	+				-0.4
1,212,225	-				+0.6
1,212,225	-				+0.1
1,212,225	-				+0.4
1,212,225	-				+0.3
1,212,328	-				-0.8
1,212,328	-				+0.7
1,212,328	-				-1.8
1,212,405	+		Psyr_1070	0.12	-0.4
1,212,682	-		Psyr_1070	0.31	+0.7
1,212,682	-		Psyr_1070	0.31	+0.3
1,212,693	+		Psyr_1070	0.32	+1.7
1,212,693	+		Psyr_1070	0.32	-0.3
1,212,693	+		Psyr_1070	0.32	+0.1
1,212,693	+		Psyr_1070	0.32	-0.2
1,212,693	+		Psyr_1070	0.32	-0.0
1,212,694	-				+1.4
1,212,694	-		Psyr_1070	0.32	-0.3
1,212,694	-		Psyr_1070	0.32	-0.4
1,212,694	-		Psyr_1070	0.32	-0.3
1,212,694	-		Psyr_1070	0.32	+0.4
1,212,694	-		Psyr_1070	0.32	+0.3
1,212,717	+		Psyr_1070	0.33	-1.3
1,212,717	+		Psyr_1070	0.33	+0.4
1,212,717	+		Psyr_1070	0.33	+1.2
1,212,717	+		Psyr_1070	0.33	-0.8
1,212,717	+		Psyr_1070	0.33	+0.6
1,212,717	+		Psyr_1070	0.33	-1.7
1,212,717	+		Psyr_1070	0.33	-0.8
1,212,717	+		Psyr_1070	0.33	-0.4
1,212,718	-		Psyr_1070	0.33	+1.6
1,212,718	-		Psyr_1070	0.33	+0.2
1,212,718	-		Psyr_1070	0.33	+0.4
1,212,718	-		Psyr_1070	0.33	+1.9
1,212,718	-		Psyr_1070	0.33	+0.6
1,212,718	-		Psyr_1070	0.33	-0.0
1,212,721	+		Psyr_1070	0.34	-0.8
1,212,721	+		Psyr_1070	0.34	-1.0
1,212,721	+		Psyr_1070	0.34	-0.4
1,212,721	+		Psyr_1070	0.34	+0.0
1,212,721	+		Psyr_1070	0.34	+1.5
1,212,721	+		Psyr_1070	0.34	-0.5
1,212,721	+		Psyr_1070	0.34	-1.3
1,212,721	+		Psyr_1070	0.34	+0.4
1,212,721	+		Psyr_1070	0.34	+0.3
1,212,721	+		Psyr_1070	0.34	+1.2
1,212,721	+		Psyr_1070	0.34	-1.7
1,212,721	+		Psyr_1070	0.34	-0.7
1,212,722	-		Psyr_1070	0.34	-0.4
1,212,722	-		Psyr_1070	0.34	-0.4
1,212,722	-		Psyr_1070	0.34	-0.2
1,212,722	-		Psyr_1070	0.34	-1.4
1,212,722	-		Psyr_1070	0.34	+0.5
1,212,722	-		Psyr_1070	0.34	+0.2
1,212,722	-		Psyr_1070	0.34	-0.1
1,212,722	-		Psyr_1070	0.34	-0.2
1,212,722	-		Psyr_1070	0.34	-0.2
1,212,722	-		Psyr_1070	0.34	-1.7
1,212,722	-		Psyr_1070	0.34	-1.2
1,212,722	-		Psyr_1070	0.34	+1.0
1,212,722	-		Psyr_1070	0.34	-0.3
1,212,809	+		Psyr_1070	0.40	-0.5
1,212,810	-		Psyr_1070	0.40	+0.5
1,212,810	-		Psyr_1070	0.40	+0.0
1,212,810	-		Psyr_1070	0.40	-0.8
1,212,887	+		Psyr_1070	0.45	+0.9
1,212,887	+		Psyr_1070	0.45	+0.2
1,212,887	+		Psyr_1070	0.45	-0.2
1,212,953	-		Psyr_1070	0.50	+0.8
1,213,098	+		Psyr_1070	0.60	-3.0
1,213,098	+		Psyr_1070	0.60	-0.2
1,213,098	+		Psyr_1070	0.60	-0.3
1,213,099	-		Psyr_1070	0.60	+0.6
1,213,099	-		Psyr_1070	0.60	-0.3
1,213,099	-		Psyr_1070	0.60	-0.4
1,213,185	+		Psyr_1070	0.66	+0.3
1,213,185	+		Psyr_1070	0.66	-0.5
1,213,186	-		Psyr_1070	0.66	+1.4
1,213,186	-		Psyr_1070	0.66	+1.2
1,213,186	-		Psyr_1070	0.66	+2.2
1,213,609	+				-1.2
1,213,610	-				-1.8
1,213,667	-				+1.3
1,213,711	-				+0.6
1,213,725	-				+0.4
1,213,725	-				+0.2
1,213,767	+				-0.3
1,213,767	+				-0.2
1,213,768	-				-0.4
1,213,896	+		Psyr_1071	0.14	+0.3
1,213,897	-		Psyr_1071	0.14	-1.0
1,214,030	+		Psyr_1071	0.34	+1.0
1,214,030	+		Psyr_1071	0.34	+2.7
1,214,031	-		Psyr_1071	0.35	-1.7
1,214,031	-		Psyr_1071	0.35	-0.3
1,214,031	-		Psyr_1071	0.35	-2.4
1,214,038	+		Psyr_1071	0.36	-0.5
1,214,038	+		Psyr_1071	0.36	-2.0
1,214,038	+		Psyr_1071	0.36	+1.2
1,214,038	+		Psyr_1071	0.36	-0.3
1,214,039	-		Psyr_1071	0.36	+0.3
1,214,039	-		Psyr_1071	0.36	-1.2
1,214,039	-		Psyr_1071	0.36	-0.8
1,214,039	-		Psyr_1071	0.36	+0.1
1,214,039	-		Psyr_1071	0.36	-0.3
1,214,039	-		Psyr_1071	0.36	+0.8
1,214,261	-		Psyr_1071	0.69	-0.8
1,214,272	-		Psyr_1071	0.71	-1.2
1,214,272	-		Psyr_1071	0.71	-0.0
1,214,323	-		Psyr_1071	0.79	-0.4
1,214,323	-		Psyr_1071	0.79	+0.9
1,214,323	-		Psyr_1071	0.79	-0.9
1,214,380	+		Psyr_1071	0.87	+0.6
1,214,381	-		Psyr_1071	0.88	+0.6
1,214,381	-		Psyr_1071	0.88	-0.3
1,214,411	+				+1.8
1,214,506	+				+1.1
1,214,506	+				+1.6
1,214,507	-				-1.2
1,214,551	+				+1.6
1,214,588	-				-2.2
1,214,588	-				-0.1
1,214,658	+				+1.1
1,214,658	+				+1.5
1,214,658	+				+2.9
1,214,658	+				+2.9
1,214,658	+				+2.2
1,214,658	+				+0.8
1,214,658	+				+2.4
1,214,658	+				-0.4
1,214,658	+				+1.3
1,214,658	+				+2.4
1,214,659	-				+0.2
1,214,659	-				-0.8
1,214,659	-				-1.2
1,214,659	-				-1.8
1,214,659	-				-1.9
1,214,659	-				-1.1
1,214,659	-				-0.7
1,214,659	-				+0.0
1,214,659	-				-2.8
1,214,660	+				+1.0
1,214,660	+				+3.4
1,214,660	+				+0.6
1,214,660	+				+1.6
1,214,661	-				+0.4
1,214,661	-				+0.1
1,214,661	-				+0.1
1,214,661	-				-0.5
1,214,666	+				+1.4
1,214,666	+				+1.0
1,214,667	-				-1.0
1,214,669	+				-0.4
1,214,669	+				+1.4
1,214,669	+				+1.7
1,214,669	+				+2.2
1,214,669	+				-0.8
1,214,669	+				+1.5
1,214,669	+				+2.4
1,214,669	+				+1.4
1,214,670	-				-0.2
1,214,670	-				-0.7
1,214,670	-				-0.4
1,214,670	-				+0.2
1,214,670	-				-1.3
1,214,670	-				+0.1
1,214,670	-				-0.4
1,214,670	-				-0.1
1,214,673	+				+1.6
1,214,673	+				+0.2
1,214,673	+				+2.2
1,214,673	+				+0.0
1,214,673	+				+0.8
1,214,673	+				+1.3
1,214,673	+				+1.7
1,214,673	+				+0.5
1,214,674	-				-0.8
1,214,674	-				-1.3
1,214,674	-				-0.1
1,214,674	-				-1.4
1,214,675	+				+1.8