Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3672 and Psyr_3673 are separated by 1 nucleotides Psyr_3673 and Psyr_3674 overlap by 4 nucleotides Psyr_3674 and Psyr_3675 overlap by 4 nucleotides Psyr_3675 and Psyr_3676 are separated by 0 nucleotides
Psyr_3672: Psyr_3672 - cobalamin-5'-phosphate synthase, at 4,359,106 to 4,359,837
_3672
Psyr_3673: Psyr_3673 - Phosphoglycerate/bisphosphoglycerate mutase, at 4,359,839 to 4,360,411
_3673
Psyr_3674: Psyr_3674 - Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 4,360,408 to 4,361,460
_3674
Psyr_3675: Psyr_3675 - adenosylcobinamide kinase, at 4,361,457 to 4,361,978
_3675
Psyr_3676: Psyr_3676 - adenosylcobyric acid synthase (glutamine-hydrolysing), at 4,361,979 to 4,363,439
_3676
Position (kb)
4360
4361
4362 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4359.647 kb on - strand, within Psyr_3672 at 4359.737 kb on + strand, within Psyr_3672 at 4360.002 kb on + strand, within Psyr_3673 at 4360.002 kb on + strand, within Psyr_3673 at 4360.087 kb on - strand, within Psyr_3673 at 4360.087 kb on - strand, within Psyr_3673 at 4360.490 kb on - strand at 4360.640 kb on - strand, within Psyr_3674 at 4360.715 kb on + strand, within Psyr_3674 at 4360.988 kb on - strand, within Psyr_3674 at 4360.988 kb on - strand, within Psyr_3674 at 4361.229 kb on - strand, within Psyr_3674 at 4361.454 kb on + strand at 4361.454 kb on + strand at 4361.454 kb on + strand at 4361.455 kb on - strand at 4361.455 kb on - strand at 4361.455 kb on - strand at 4361.455 kb on - strand at 4361.460 kb on + strand at 4361.563 kb on + strand, within Psyr_3675 at 4361.563 kb on + strand, within Psyr_3675 at 4361.563 kb on + strand, within Psyr_3675 at 4361.890 kb on + strand, within Psyr_3675 at 4361.890 kb on + strand, within Psyr_3675 at 4361.890 kb on + strand, within Psyr_3675 at 4361.891 kb on - strand, within Psyr_3675 at 4362.423 kb on + strand, within Psyr_3676 at 4362.424 kb on - strand, within Psyr_3676
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 4,359,647 - Psyr_3672 0.74 -1.3 4,359,737 + Psyr_3672 0.86 -0.3 4,360,002 + Psyr_3673 0.28 -1.3 4,360,002 + Psyr_3673 0.28 -0.5 4,360,087 - Psyr_3673 0.43 +0.5 4,360,087 - Psyr_3673 0.43 +1.5 4,360,490 - -1.1 4,360,640 - Psyr_3674 0.22 +2.1 4,360,715 + Psyr_3674 0.29 +0.5 4,360,988 - Psyr_3674 0.55 -1.6 4,360,988 - Psyr_3674 0.55 +0.9 4,361,229 - Psyr_3674 0.78 -0.5 4,361,454 + +0.1 4,361,454 + +0.5 4,361,454 + -0.5 4,361,455 - -0.4 4,361,455 - -0.1 4,361,455 - +0.2 4,361,455 - -1.9 4,361,460 + -0.4 4,361,563 + Psyr_3675 0.20 -2.2 4,361,563 + Psyr_3675 0.20 -2.1 4,361,563 + Psyr_3675 0.20 -1.9 4,361,890 + Psyr_3675 0.83 -0.5 4,361,890 + Psyr_3675 0.83 +0.1 4,361,890 + Psyr_3675 0.83 +1.5 4,361,891 - Psyr_3675 0.83 -0.8 4,362,423 + Psyr_3676 0.30 -1.5 4,362,424 - Psyr_3676 0.30 +2.5
Or see this region's nucleotide sequence