Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3642 and Psyr_3643 are separated by 121 nucleotides Psyr_3643 and Psyr_3644 overlap by 4 nucleotides Psyr_3644 and Psyr_3645 are separated by 57 nucleotides
Psyr_3642: Psyr_3642 - SSU ribosomal protein S1P, at 4,323,992 to 4,325,683
_3642
Psyr_3643: Psyr_3643 - cytidylate kinase, at 4,325,805 to 4,326,494
_3643
Psyr_3644: Psyr_3644 - prephenate dehydrogenase, at 4,326,491 to 4,328,095
_3644
Psyr_3645: Psyr_3645 - prephenate dehydratase, at 4,328,153 to 4,329,247
_3645
Position (kb)
4326
4327
4328
4329 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4326.587 kb on - strand at 4326.809 kb on - strand, within Psyr_3644 at 4327.177 kb on + strand, within Psyr_3644 at 4327.244 kb on + strand, within Psyr_3644 at 4327.244 kb on + strand, within Psyr_3644 at 4327.245 kb on - strand, within Psyr_3644 at 4327.430 kb on + strand, within Psyr_3644 at 4327.431 kb on - strand, within Psyr_3644 at 4327.431 kb on - strand, within Psyr_3644 at 4327.633 kb on + strand, within Psyr_3644 at 4328.103 kb on + strand at 4328.104 kb on - strand at 4328.124 kb on - strand at 4328.124 kb on - strand at 4328.133 kb on - strand at 4328.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 4,326,587 - -1.0 4,326,809 - Psyr_3644 0.20 -1.8 4,327,177 + Psyr_3644 0.43 +0.3 4,327,244 + Psyr_3644 0.47 -0.2 4,327,244 + Psyr_3644 0.47 +1.5 4,327,245 - Psyr_3644 0.47 +1.5 4,327,430 + Psyr_3644 0.59 +1.5 4,327,431 - Psyr_3644 0.59 +0.2 4,327,431 - Psyr_3644 0.59 +2.5 4,327,633 + Psyr_3644 0.71 -2.3 4,328,103 + +1.5 4,328,104 - +0.1 4,328,124 - +0.3 4,328,124 - +0.2 4,328,133 - -0.8 4,328,133 - +0.2
Or see this region's nucleotide sequence