Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3012 and Psyr_3013 are separated by 157 nucleotides Psyr_3013 and Psyr_3014 are separated by 77 nucleotides Psyr_3014 and Psyr_3015 overlap by 1 nucleotides
Psyr_3012: Psyr_3012 - conserved hypothetical protein, at 3,606,415 to 3,606,681
_3012
Psyr_3013: Psyr_3013 - magnesium chelatase subunit ChlD, at 3,606,839 to 3,607,426
_3013
Psyr_3014: Psyr_3014 - protoporphyrin IX magnesium-chelatase, at 3,607,504 to 3,608,538
_3014
Psyr_3015: Psyr_3015 - cobaltochelatase CobN subunit, at 3,608,538 to 3,612,302
_3015
Position (kb)
3607
3608
3609 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3606.584 kb on - strand, within Psyr_3012 at 3606.712 kb on + strand at 3607.313 kb on + strand, within Psyr_3013 at 3607.313 kb on + strand, within Psyr_3013 at 3607.313 kb on + strand, within Psyr_3013 at 3607.505 kb on + strand at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.704 kb on + strand at 3608.810 kb on - strand at 3608.998 kb on + strand, within Psyr_3015 at 3608.998 kb on + strand, within Psyr_3015 at 3608.999 kb on - strand, within Psyr_3015 at 3609.119 kb on - strand, within Psyr_3015 at 3609.199 kb on - strand, within Psyr_3015 at 3609.212 kb on - strand, within Psyr_3015
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 3,606,584 - Psyr_3012 0.63 -0.4 3,606,712 + -1.1 3,607,313 + Psyr_3013 0.81 -2.1 3,607,313 + Psyr_3013 0.81 +0.9 3,607,313 + Psyr_3013 0.81 -1.3 3,607,505 + -1.1 3,608,210 + Psyr_3014 0.68 -0.8 3,608,210 + Psyr_3014 0.68 -0.1 3,608,210 + Psyr_3014 0.68 -0.7 3,608,210 + Psyr_3014 0.68 -0.5 3,608,210 + Psyr_3014 0.68 +2.5 3,608,211 - Psyr_3014 0.68 -1.1 3,608,211 - Psyr_3014 0.68 -1.3 3,608,211 - Psyr_3014 0.68 +1.5 3,608,550 + +0.5 3,608,550 + +2.8 3,608,550 + +2.5 3,608,550 + -0.2 3,608,550 + -0.5 3,608,550 + -1.1 3,608,551 - -0.1 3,608,551 - +0.5 3,608,551 - -1.3 3,608,551 - -0.8 3,608,551 - -0.1 3,608,551 - +1.2 3,608,551 - -1.1 3,608,704 + +0.5 3,608,810 - -1.2 3,608,998 + Psyr_3015 0.12 +2.5 3,608,998 + Psyr_3015 0.12 -0.1 3,608,999 - Psyr_3015 0.12 -1.1 3,609,119 - Psyr_3015 0.15 -0.5 3,609,199 - Psyr_3015 0.18 -0.5 3,609,212 - Psyr_3015 0.18 +0.2
Or see this region's nucleotide sequence