Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5067

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_5066 and Psyr_5067 are separated by 130 nucleotidesPsyr_5067 and Psyr_5068 are separated by 35 nucleotides Psyr_5066: Psyr_5066 - import inner membrane translocase, subunit Tim44, at 6,010,980 to 6,011,825 _5066 Psyr_5067: Psyr_5067 - conserved hypothetical protein, at 6,011,956 to 6,012,363 _5067 Psyr_5068: Psyr_5068 - transporter, CPA2 family, at 6,012,399 to 6,014,162 _5068 Position (kb) 6011 6012 6013Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6010.974 kb on - strandat 6010.979 kb on + strandat 6010.980 kb on - strandat 6010.993 kb on + strandat 6010.993 kb on + strandat 6010.993 kb on + strandat 6010.994 kb on - strandat 6011.891 kb on - strandat 6011.894 kb on + strandat 6011.894 kb on + strandat 6011.894 kb on + strandat 6011.894 kb on + strandat 6011.894 kb on + strandat 6011.895 kb on - strandat 6011.917 kb on - strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.921 kb on + strandat 6011.922 kb on - strandat 6011.922 kb on - strandat 6011.922 kb on - strandat 6012.115 kb on + strand, within Psyr_5067at 6012.115 kb on + strand, within Psyr_5067at 6012.116 kb on - strand, within Psyr_5067at 6012.116 kb on - strand, within Psyr_5067at 6012.116 kb on - strand, within Psyr_5067at 6012.116 kb on - strand, within Psyr_5067at 6012.116 kb on - strand, within Psyr_5067at 6012.163 kb on + strand, within Psyr_5067at 6012.163 kb on + strand, within Psyr_5067at 6012.245 kb on - strand, within Psyr_5067at 6012.247 kb on + strand, within Psyr_5067at 6012.247 kb on + strand, within Psyr_5067at 6012.248 kb on - strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.272 kb on + strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.273 kb on - strand, within Psyr_5067at 6012.461 kb on + strandat 6012.461 kb on + strandat 6012.461 kb on + strandat 6012.461 kb on + strandat 6012.461 kb on + strandat 6012.462 kb on - strandat 6012.462 kb on - strandat 6012.585 kb on + strand, within Psyr_5068at 6012.585 kb on + strand, within Psyr_5068at 6012.585 kb on + strand, within Psyr_5068at 6012.626 kb on + strand, within Psyr_5068at 6012.627 kb on - strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.805 kb on + strand, within Psyr_5068at 6012.806 kb on - strand, within Psyr_5068at 6012.806 kb on - strand, within Psyr_5068at 6012.829 kb on + strand, within Psyr_5068at 6012.830 kb on - strand, within Psyr_5068at 6012.959 kb on - strand, within Psyr_5068at 6013.187 kb on + strand, within Psyr_5068at 6013.188 kb on - strand, within Psyr_5068at 6013.282 kb on + strand, within Psyr_5068at 6013.282 kb on + strand, within Psyr_5068

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
6,010,974 - -1.0
6,010,979 + -0.8
6,010,980 - -0.3
6,010,993 + -0.3
6,010,993 + -1.8
6,010,993 + -0.9
6,010,994 - +0.7
6,011,891 - -0.1
6,011,894 + -0.1
6,011,894 + +1.0
6,011,894 + +0.4
6,011,894 + -0.2
6,011,894 + +0.6
6,011,895 - +1.6
6,011,917 - +2.7
6,011,921 + +0.3
6,011,921 + -1.3
6,011,921 + -0.5
6,011,921 + +0.5
6,011,921 + +0.1
6,011,921 + -0.2
6,011,921 + -1.2
6,011,921 + -0.0
6,011,922 - -1.4
6,011,922 - -0.8
6,011,922 - -1.2
6,012,115 + Psyr_5067 0.39 -0.4
6,012,115 + Psyr_5067 0.39 +1.2
6,012,116 - Psyr_5067 0.39 -0.6
6,012,116 - Psyr_5067 0.39 +0.2
6,012,116 - Psyr_5067 0.39 +1.2
6,012,116 - Psyr_5067 0.39 +1.2
6,012,116 - Psyr_5067 0.39 -0.4
6,012,163 + Psyr_5067 0.51 +0.2
6,012,163 + Psyr_5067 0.51 -1.2
6,012,245 - Psyr_5067 0.71 -0.4
6,012,247 + Psyr_5067 0.71 -0.4
6,012,247 + Psyr_5067 0.71 +3.5
6,012,248 - Psyr_5067 0.72 -1.6
6,012,272 + Psyr_5067 0.77 +0.2
6,012,272 + Psyr_5067 0.77 +1.2
6,012,272 + Psyr_5067 0.77 +0.2
6,012,272 + Psyr_5067 0.77 +1.2
6,012,272 + Psyr_5067 0.77 +1.2
6,012,272 + Psyr_5067 0.77 +0.2
6,012,272 + Psyr_5067 0.77 +0.2
6,012,273 - Psyr_5067 0.78 +1.2
6,012,273 - Psyr_5067 0.78 +0.2
6,012,273 - Psyr_5067 0.78 +0.2
6,012,273 - Psyr_5067 0.78 -1.0
6,012,273 - Psyr_5067 0.78 -1.4
6,012,273 - Psyr_5067 0.78 +3.2
6,012,273 - Psyr_5067 0.78 +2.2
6,012,461 + -0.8
6,012,461 + -0.6
6,012,461 + -0.7
6,012,461 + -1.4
6,012,461 + -0.4
6,012,462 - -0.8
6,012,462 - -1.9
6,012,585 + Psyr_5068 0.11 -1.0
6,012,585 + Psyr_5068 0.11 -0.6
6,012,585 + Psyr_5068 0.11 -0.8
6,012,626 + Psyr_5068 0.13 +0.6
6,012,627 - Psyr_5068 0.13 -0.4
6,012,805 + Psyr_5068 0.23 -1.6
6,012,805 + Psyr_5068 0.23 +0.1
6,012,805 + Psyr_5068 0.23 -0.3
6,012,805 + Psyr_5068 0.23 -0.3
6,012,805 + Psyr_5068 0.23 +0.1
6,012,805 + Psyr_5068 0.23 -0.4
6,012,805 + Psyr_5068 0.23 +1.4
6,012,806 - Psyr_5068 0.23 +0.0
6,012,806 - Psyr_5068 0.23 +0.2
6,012,829 + Psyr_5068 0.24 +0.3
6,012,830 - Psyr_5068 0.24 -0.8
6,012,959 - Psyr_5068 0.32 +0.5
6,013,187 + Psyr_5068 0.45 +0.9
6,013,188 - Psyr_5068 0.45 -0.2
6,013,282 + Psyr_5068 0.50 -0.1
6,013,282 + Psyr_5068 0.50 +0.2

Or see this region's nucleotide sequence