Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4466

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4464 and Psyr_4465 overlap by 4 nucleotidesPsyr_4465 and Psyr_4466 are separated by 269 nucleotidesPsyr_4466 and Psyr_4467 are separated by 54 nucleotidesPsyr_4467 and Psyr_4468 are separated by 61 nucleotides Psyr_4464: Psyr_4464 - lipoprotein, putative, at 5,326,551 to 5,327,000 _4464 Psyr_4465: Psyr_4465 - conserved domain protein, at 5,326,997 to 5,327,650 _4465 Psyr_4466: Psyr_4466 - Thioredoxin, at 5,327,920 to 5,328,792 _4466 Psyr_4467: Psyr_4467 - conserved hypothetical protein, at 5,328,847 to 5,329,200 _4467 Psyr_4468: Psyr_4468 - conserved hypothetical protein, at 5,329,262 to 5,329,684 _4468 Position (kb) 5327 5328 5329Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5327.169 kb on - strand, within Psyr_4465at 5327.393 kb on + strand, within Psyr_4465at 5327.659 kb on + strandat 5327.659 kb on + strandat 5327.659 kb on + strandat 5327.659 kb on + strandat 5327.660 kb on - strandat 5327.660 kb on - strandat 5327.660 kb on - strandat 5327.660 kb on - strandat 5327.660 kb on - strandat 5327.682 kb on - strandat 5327.694 kb on + strandat 5327.695 kb on - strandat 5327.817 kb on + strandat 5327.817 kb on + strandat 5327.818 kb on - strandat 5327.818 kb on - strandat 5327.848 kb on + strandat 5327.886 kb on + strandat 5327.886 kb on + strandat 5327.886 kb on + strandat 5327.886 kb on + strandat 5327.886 kb on + strandat 5327.886 kb on + strandat 5327.886 kb on + strandat 5327.887 kb on - strandat 5327.887 kb on - strandat 5327.887 kb on - strandat 5327.887 kb on - strandat 5327.887 kb on - strandat 5327.887 kb on - strandat 5327.887 kb on - strandat 5327.938 kb on + strandat 5327.938 kb on + strandat 5327.938 kb on + strandat 5327.938 kb on + strandat 5327.939 kb on - strandat 5327.939 kb on - strandat 5327.939 kb on - strandat 5328.082 kb on + strand, within Psyr_4466at 5328.082 kb on + strand, within Psyr_4466at 5328.083 kb on - strand, within Psyr_4466at 5328.398 kb on - strand, within Psyr_4466at 5328.631 kb on + strand, within Psyr_4466at 5328.631 kb on + strand, within Psyr_4466at 5328.683 kb on - strand, within Psyr_4466at 5328.719 kb on + strandat 5328.720 kb on - strandat 5328.787 kb on + strandat 5328.787 kb on + strandat 5328.787 kb on + strandat 5328.787 kb on + strandat 5328.787 kb on + strandat 5328.787 kb on + strandat 5328.790 kb on + strandat 5328.790 kb on + strandat 5328.790 kb on + strandat 5328.790 kb on + strandat 5328.790 kb on + strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.791 kb on - strandat 5328.795 kb on + strandat 5328.795 kb on + strandat 5328.795 kb on + strandat 5328.795 kb on + strandat 5328.795 kb on + strandat 5328.796 kb on - strandat 5328.796 kb on - strandat 5328.796 kb on - strandat 5328.796 kb on - strandat 5328.796 kb on - strandat 5328.869 kb on + strandat 5328.870 kb on - strandat 5329.192 kb on - strandat 5329.192 kb on - strandat 5329.227 kb on + strandat 5329.227 kb on + strandat 5329.227 kb on + strandat 5329.227 kb on + strandat 5329.227 kb on + strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.228 kb on - strandat 5329.485 kb on + strand, within Psyr_4468at 5329.485 kb on + strand, within Psyr_4468at 5329.485 kb on + strand, within Psyr_4468at 5329.485 kb on + strand, within Psyr_4468at 5329.485 kb on + strand, within Psyr_4468at 5329.486 kb on - strand, within Psyr_4468at 5329.486 kb on - strand, within Psyr_4468at 5329.486 kb on - strand, within Psyr_4468at 5329.486 kb on - strand, within Psyr_4468at 5329.486 kb on - strand, within Psyr_4468at 5329.633 kb on + strand, within Psyr_4468at 5329.633 kb on + strand, within Psyr_4468at 5329.634 kb on - strand, within Psyr_4468at 5329.639 kb on + strand, within Psyr_4468at 5329.639 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.641 kb on + strand, within Psyr_4468at 5329.642 kb on - strandat 5329.642 kb on - strandat 5329.642 kb on - strandat 5329.642 kb on - strandat 5329.642 kb on - strandat 5329.688 kb on + strandat 5329.688 kb on + strandat 5329.689 kb on - strandat 5329.689 kb on - strandat 5329.689 kb on - strandat 5329.689 kb on - strandat 5329.689 kb on - strandat 5329.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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5,327,169 - Psyr_4465 0.26 -0.3
5,327,393 + Psyr_4465 0.61 -0.4
5,327,659 + -0.1
5,327,659 + +1.1
5,327,659 + -0.3
5,327,659 + -0.0
5,327,660 - -0.6
5,327,660 - -0.1
5,327,660 - +0.1
5,327,660 - -0.4
5,327,660 - -0.7
5,327,682 - -0.8
5,327,694 + -0.6
5,327,695 - +1.5
5,327,817 + +0.3
5,327,817 + +0.6
5,327,818 - +0.3
5,327,818 - +0.8
5,327,848 + -2.1
5,327,886 + +2.0
5,327,886 + -1.3
5,327,886 + +0.5
5,327,886 + -0.0
5,327,886 + +0.9
5,327,886 + -0.4
5,327,886 + -1.7
5,327,887 - +0.3
5,327,887 - +0.6
5,327,887 - +0.3
5,327,887 - +0.6
5,327,887 - -0.4
5,327,887 - +0.1
5,327,887 - -0.4
5,327,938 + -0.1
5,327,938 + -0.2
5,327,938 + +0.7
5,327,938 + +1.3
5,327,939 - +0.4
5,327,939 - -0.4
5,327,939 - +0.1
5,328,082 + Psyr_4466 0.19 -0.6
5,328,082 + Psyr_4466 0.19 -0.1
5,328,083 - Psyr_4466 0.19 -0.3
5,328,398 - Psyr_4466 0.55 -1.0
5,328,631 + Psyr_4466 0.81 +0.0
5,328,631 + Psyr_4466 0.81 -0.5
5,328,683 - Psyr_4466 0.87 -0.5
5,328,719 + +0.0
5,328,720 - +0.1
5,328,787 + -0.3
5,328,787 + -0.4
5,328,787 + -0.9
5,328,787 + +0.6
5,328,787 + -0.3
5,328,787 + -1.7
5,328,790 + +1.0
5,328,790 + -0.2
5,328,790 + +1.1
5,328,790 + -2.8
5,328,790 + +0.2
5,328,791 - -1.0
5,328,791 - +0.7
5,328,791 - +0.2
5,328,791 - +0.6
5,328,791 - +0.3
5,328,791 - -0.7
5,328,795 + -0.7
5,328,795 + +0.2
5,328,795 + +0.3
5,328,795 + -0.9
5,328,795 + +0.3
5,328,796 - +0.5
5,328,796 - -0.1
5,328,796 - +0.0
5,328,796 - -1.2
5,328,796 - +0.6
5,328,869 + +0.1
5,328,870 - +0.3
5,329,192 - +0.0
5,329,192 - +0.9
5,329,227 + +0.6
5,329,227 + -0.2
5,329,227 + +0.9
5,329,227 + +0.2
5,329,227 + +0.1
5,329,228 - -0.1
5,329,228 - -1.3
5,329,228 - +0.6
5,329,228 - +0.0
5,329,228 - +0.3
5,329,228 - -0.9
5,329,228 - -1.2
5,329,228 - +0.4
5,329,228 - -0.4
5,329,228 - +0.6
5,329,228 - +0.6
5,329,228 - +0.9
5,329,228 - -2.0
5,329,228 - -1.1
5,329,228 - +0.4
5,329,485 + Psyr_4468 0.53 -2.9
5,329,485 + Psyr_4468 0.53 +0.0
5,329,485 + Psyr_4468 0.53 +0.4
5,329,485 + Psyr_4468 0.53 +0.1
5,329,485 + Psyr_4468 0.53 -0.4
5,329,486 - Psyr_4468 0.53 +0.1
5,329,486 - Psyr_4468 0.53 +0.1
5,329,486 - Psyr_4468 0.53 -0.1
5,329,486 - Psyr_4468 0.53 +0.2
5,329,486 - Psyr_4468 0.53 +0.1
5,329,633 + Psyr_4468 0.88 +0.3
5,329,633 + Psyr_4468 0.88 +0.6
5,329,634 - Psyr_4468 0.88 -0.6
5,329,639 + Psyr_4468 0.89 -0.1
5,329,639 + Psyr_4468 0.89 +0.0
5,329,641 + Psyr_4468 0.90 -0.6
5,329,641 + Psyr_4468 0.90 +1.0
5,329,641 + Psyr_4468 0.90 +0.3
5,329,641 + Psyr_4468 0.90 -0.6
5,329,641 + Psyr_4468 0.90 +0.8
5,329,641 + Psyr_4468 0.90 -0.3
5,329,641 + Psyr_4468 0.90 -0.7
5,329,641 + Psyr_4468 0.90 +0.2
5,329,641 + Psyr_4468 0.90 +0.1
5,329,641 + Psyr_4468 0.90 -1.0
5,329,641 + Psyr_4468 0.90 +0.5
5,329,641 + Psyr_4468 0.90 +0.0
5,329,641 + Psyr_4468 0.90 +0.5
5,329,641 + Psyr_4468 0.90 +0.2
5,329,641 + Psyr_4468 0.90 +0.0
5,329,642 - -0.6
5,329,642 - -1.6
5,329,642 - +0.5
5,329,642 - +2.5
5,329,642 - +0.0
5,329,688 + -0.4
5,329,688 + -0.1
5,329,689 - +0.6
5,329,689 - +1.4
5,329,689 - +0.5
5,329,689 - +0.4
5,329,689 - +0.0
5,329,689 - -0.8

Or see this region's nucleotide sequence