Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4460

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4458 and Psyr_4459 overlap by 4 nucleotidesPsyr_4459 and Psyr_4460 are separated by 129 nucleotidesPsyr_4460 and Psyr_4461 are separated by 21 nucleotidesPsyr_4461 and Psyr_4462 are separated by 47 nucleotides Psyr_4458: Psyr_4458 - Antitermination protein NusB, at 5,321,845 to 5,322,342 _4458 Psyr_4459: Psyr_4459 - 6,7-dimethyl-8-ribityllumazine synthase, at 5,322,339 to 5,322,815 _4459 Psyr_4460: Psyr_4460 - 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II, at 5,322,945 to 5,324,036 _4460 Psyr_4461: Psyr_4461 - Lumazine-binding protein, at 5,324,058 to 5,324,720 _4461 Psyr_4462: Psyr_4462 - diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase, at 5,324,768 to 5,325,868 _4462 Position (kb) 5322 5323 5324 5325Strain fitness (log2 ratio) -2 -1 0 1at 5322.830 kb on - strandat 5322.830 kb on - strandat 5322.833 kb on - strandat 5322.870 kb on - strandat 5322.870 kb on - strandat 5322.873 kb on - strandat 5322.873 kb on - strandat 5322.873 kb on - strandat 5322.943 kb on - strandat 5322.947 kb on - strandat 5322.962 kb on - strandat 5322.962 kb on - strandat 5322.962 kb on - strandat 5322.962 kb on - strandat 5323.082 kb on - strand, within Psyr_4460at 5323.082 kb on - strand, within Psyr_4460at 5323.082 kb on - strand, within Psyr_4460at 5323.082 kb on - strand, within Psyr_4460at 5323.086 kb on - strand, within Psyr_4460at 5323.360 kb on + strand, within Psyr_4460at 5324.072 kb on - strandat 5324.072 kb on - strandat 5324.770 kb on - strandat 5324.770 kb on - strandat 5324.770 kb on - strandat 5324.771 kb on + strandat 5324.772 kb on - strandat 5324.772 kb on - strandat 5324.772 kb on - strandat 5324.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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5,322,830 - +0.2
5,322,830 - +0.4
5,322,833 - -0.6
5,322,870 - -0.7
5,322,870 - +1.4
5,322,873 - +1.0
5,322,873 - -0.4
5,322,873 - -0.9
5,322,943 - -0.6
5,322,947 - +0.2
5,322,962 - +0.1
5,322,962 - +0.1
5,322,962 - -1.3
5,322,962 - +0.1
5,323,082 - Psyr_4460 0.13 +0.7
5,323,082 - Psyr_4460 0.13 -1.7
5,323,082 - Psyr_4460 0.13 -0.4
5,323,082 - Psyr_4460 0.13 +1.6
5,323,086 - Psyr_4460 0.13 -0.4
5,323,360 + Psyr_4460 0.38 -0.4
5,324,072 - +0.5
5,324,072 - -0.0
5,324,770 - -0.3
5,324,770 - -1.8
5,324,770 - +0.1
5,324,771 + +0.6
5,324,772 - -0.2
5,324,772 - -0.1
5,324,772 - -0.5
5,324,772 - -2.7

Or see this region's nucleotide sequence