Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4367

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4365 and Psyr_4366 are separated by 28 nucleotidesPsyr_4366 and Psyr_4367 are separated by 9 nucleotidesPsyr_4367 and Psyr_4368 are separated by 60 nucleotidesPsyr_4368 and Psyr_4369 are separated by 13 nucleotides Psyr_4365: Psyr_4365 - cell elongation-specific peptidoglycan D,D-transpeptidase / peptidoglycan glycosyltransferase, at 5,218,555 to 5,220,450 _4365 Psyr_4366: Psyr_4366 - Protein of unknown function DUF163, at 5,220,479 to 5,220,946 _4366 Psyr_4367: Psyr_4367 - Iojap-related protein, at 5,220,956 to 5,221,342 _4367 Psyr_4368: Psyr_4368 - nicotinate-nucleotide adenylyltransferase, at 5,221,403 to 5,222,071 _4368 Psyr_4369: Psyr_4369 - glutamate-5-semialdehyde dehydrogenase, at 5,222,085 to 5,223,350 _4369 Position (kb) 5220 5221 5222Strain fitness (log2 ratio) -2 -1 0 1 2at 5220.453 kb on - strandat 5220.469 kb on - strandat 5220.469 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.481 kb on - strandat 5220.490 kb on - strandat 5220.523 kb on - strandat 5220.523 kb on - strandat 5220.958 kb on - strandat 5220.958 kb on - strandat 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.222 kb on - strand, within Psyr_4367at 5221.343 kb on - strandat 5221.343 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.345 kb on - strandat 5221.363 kb on - strandat 5221.363 kb on - strandat 5221.363 kb on - strandat 5221.363 kb on - strandat 5221.363 kb on - strandat 5221.363 kb on - strandat 5221.363 kb on - strandat 5222.126 kb on - strandat 5222.126 kb on - strandat 5222.126 kb on - strandat 5222.126 kb on - strandat 5222.126 kb on - strandat 5222.178 kb on - strandat 5222.178 kb on - strandat 5222.178 kb on - strandat 5222.184 kb on - strandat 5222.184 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
5,220,453 - +0.6
5,220,469 - -0.3
5,220,469 - +1.1
5,220,481 - +2.1
5,220,481 - +0.7
5,220,481 - -0.1
5,220,481 - +0.4
5,220,481 - +0.3
5,220,481 - -0.2
5,220,481 - +0.7
5,220,481 - +0.4
5,220,481 - +0.9
5,220,490 - -0.3
5,220,523 - +0.5
5,220,523 - +1.3
5,220,958 - +0.2
5,220,958 - +0.6
5,221,222 - Psyr_4367 0.69 -1.4
5,221,222 - Psyr_4367 0.69 -0.5
5,221,222 - Psyr_4367 0.69 -0.9
5,221,222 - Psyr_4367 0.69 +1.6
5,221,222 - Psyr_4367 0.69 +1.6
5,221,222 - Psyr_4367 0.69 -0.6
5,221,222 - Psyr_4367 0.69 -1.9
5,221,222 - Psyr_4367 0.69 -1.1
5,221,222 - Psyr_4367 0.69 -1.9
5,221,343 - -0.9
5,221,343 - -0.3
5,221,345 - +0.2
5,221,345 - -1.0
5,221,345 - -0.9
5,221,345 - -0.7
5,221,345 - +2.7
5,221,345 - +0.6
5,221,345 - -0.2
5,221,345 - -0.1
5,221,363 - -0.4
5,221,363 - -0.1
5,221,363 - +0.8
5,221,363 - -0.1
5,221,363 - +0.2
5,221,363 - +0.4
5,221,363 - +0.0
5,222,126 - +0.3
5,222,126 - -2.4
5,222,126 - +0.6
5,222,126 - -1.9
5,222,126 - +0.2
5,222,178 - -1.4
5,222,178 - -1.1
5,222,178 - +0.6
5,222,184 - +0.0
5,222,184 - +1.0

Or see this region's nucleotide sequence