Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4136

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4135 and Psyr_4136 are separated by 22 nucleotidesPsyr_4136 and Psyr_4137 are separated by 115 nucleotidesPsyr_4137 and Psyr_4138 overlap by 4 nucleotides Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320 _4135 Psyr_4136: Psyr_4136 - BolA-like protein, at 4,927,343 to 4,927,582 _4136 Psyr_4137: Psyr_4137 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,927,698 to 4,928,003 _4137 Psyr_4138: Psyr_4138 - Toluene tolerance, at 4,928,000 to 4,928,650 _4138 Position (kb) 4927 4928Strain fitness (log2 ratio) -2 -1 0 1at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.741 kb on - strand, within Psyr_4137at 4928.214 kb on + strand, within Psyr_4138at 4928.331 kb on + strand, within Psyr_4138at 4928.332 kb on - strand, within Psyr_4138at 4928.404 kb on - strand, within Psyr_4138at 4928.404 kb on - strand, within Psyr_4138at 4928.404 kb on - strand, within Psyr_4138at 4928.478 kb on + strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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4,927,435 - Psyr_4136 0.38 +0.6
4,927,435 - Psyr_4136 0.38 -0.6
4,927,435 - Psyr_4136 0.38 +1.2
4,927,435 - Psyr_4136 0.38 -0.8
4,927,435 - Psyr_4136 0.38 -2.3
4,927,741 - Psyr_4137 0.14 -2.0
4,928,214 + Psyr_4138 0.33 +0.2
4,928,331 + Psyr_4138 0.51 -2.0
4,928,332 - Psyr_4138 0.51 -0.8
4,928,404 - Psyr_4138 0.62 -1.1
4,928,404 - Psyr_4138 0.62 -0.1
4,928,404 - Psyr_4138 0.62 -1.1
4,928,478 + Psyr_4138 0.73 +1.2
4,928,479 - Psyr_4138 0.74 +0.1
4,928,479 - Psyr_4138 0.74 +0.5
4,928,479 - Psyr_4138 0.74 -1.4
4,928,503 - Psyr_4138 0.77 +0.2
4,928,503 - Psyr_4138 0.77 +0.2
4,928,503 - Psyr_4138 0.77 +1.2

Or see this region's nucleotide sequence