Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4100

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4098 and Psyr_4099 are separated by 14 nucleotidesPsyr_4099 and Psyr_4100 are separated by 3 nucleotidesPsyr_4100 and Psyr_4101 overlap by 4 nucleotides Psyr_4098: Psyr_4098 - cell division protein FtsA, at 4,886,377 to 4,887,633 _4098 Psyr_4099: Psyr_4099 - Cell division protein FtsQ, at 4,887,648 to 4,888,517 _4099 Psyr_4100: Psyr_4100 - D-alanine--D-alanine ligase, at 4,888,521 to 4,889,480 _4100 Psyr_4101: Psyr_4101 - UDP-N-acetylmuramate--L-alanine ligase, at 4,889,477 to 4,890,937 _4101 Position (kb) 4888 4889 4890Strain fitness (log2 ratio) -3 -2 -1 0 1at 4888.514 kb on - strandat 4888.514 kb on - strandat 4888.514 kb on - strandat 4888.514 kb on - strandat 4888.602 kb on - strandat 4888.638 kb on - strand, within Psyr_4100at 4888.638 kb on - strand, within Psyr_4100at 4888.808 kb on - strand, within Psyr_4100at 4888.808 kb on - strand, within Psyr_4100at 4888.921 kb on - strand, within Psyr_4100at 4888.924 kb on - strand, within Psyr_4100at 4888.924 kb on - strand, within Psyr_4100at 4888.924 kb on - strand, within Psyr_4100at 4888.924 kb on - strand, within Psyr_4100at 4888.924 kb on - strand, within Psyr_4100at 4888.937 kb on - strand, within Psyr_4100at 4888.937 kb on - strand, within Psyr_4100at 4889.064 kb on - strand, within Psyr_4100at 4889.064 kb on - strand, within Psyr_4100at 4889.064 kb on - strand, within Psyr_4100at 4889.103 kb on - strand, within Psyr_4100at 4889.103 kb on - strand, within Psyr_4100at 4889.184 kb on - strand, within Psyr_4100at 4889.256 kb on - strand, within Psyr_4100at 4889.538 kb on - strandat 4889.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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4,888,514 - -0.7
4,888,514 - -1.1
4,888,514 - -0.8
4,888,514 - -0.7
4,888,602 - +0.2
4,888,638 - Psyr_4100 0.12 +0.2
4,888,638 - Psyr_4100 0.12 -1.9
4,888,808 - Psyr_4100 0.30 -0.3
4,888,808 - Psyr_4100 0.30 +0.3
4,888,921 - Psyr_4100 0.42 -2.6
4,888,924 - Psyr_4100 0.42 -1.3
4,888,924 - Psyr_4100 0.42 -0.4
4,888,924 - Psyr_4100 0.42 -0.6
4,888,924 - Psyr_4100 0.42 +1.2
4,888,924 - Psyr_4100 0.42 -1.1
4,888,937 - Psyr_4100 0.43 -2.6
4,888,937 - Psyr_4100 0.43 -0.0
4,889,064 - Psyr_4100 0.57 -1.0
4,889,064 - Psyr_4100 0.57 +0.3
4,889,064 - Psyr_4100 0.57 -2.2
4,889,103 - Psyr_4100 0.61 -2.9
4,889,103 - Psyr_4100 0.61 -0.0
4,889,184 - Psyr_4100 0.69 -0.1
4,889,256 - Psyr_4100 0.77 +0.1
4,889,538 - -0.5
4,889,538 - -0.1

Or see this region's nucleotide sequence