Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3886

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3885 and Psyr_3886 are separated by 185 nucleotidesPsyr_3886 and Psyr_3887 are separated by 128 nucleotides Psyr_3885: Psyr_3885 - ParA family protein, at 4,625,251 to 4,626,345 _3885 Psyr_3886: Psyr_3886 - methionyl-tRNA synthetase, at 4,626,531 to 4,628,579 _3886 Psyr_3887: Psyr_3887 - Electron transport complex, RnfABCDGE type, B subunit, at 4,628,708 to 4,629,583 _3887 Position (kb) 4626 4627 4628 4629Strain fitness (log2 ratio) -1 0 1 2at 4626.352 kb on - strandat 4626.385 kb on - strandat 4626.389 kb on + strandat 4626.389 kb on + strandat 4626.489 kb on + strandat 4628.320 kb on + strand, within Psyr_3886at 4628.320 kb on + strand, within Psyr_3886at 4628.320 kb on + strand, within Psyr_3886at 4628.320 kb on + strand, within Psyr_3886at 4628.577 kb on + strandat 4628.578 kb on - strandat 4628.578 kb on - strandat 4628.578 kb on - strandat 4628.756 kb on - strandat 4628.828 kb on - strand, within Psyr_3887at 4628.989 kb on + strand, within Psyr_3887

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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4,626,352 - +2.7
4,626,385 - -0.0
4,626,389 + +0.6
4,626,389 + -0.3
4,626,489 + +0.2
4,628,320 + Psyr_3886 0.87 +1.2
4,628,320 + Psyr_3886 0.87 -0.6
4,628,320 + Psyr_3886 0.87 -0.4
4,628,320 + Psyr_3886 0.87 +1.2
4,628,577 + +0.0
4,628,578 - +0.0
4,628,578 - +0.2
4,628,578 - +0.3
4,628,756 - +1.0
4,628,828 - Psyr_3887 0.14 -0.9
4,628,989 + Psyr_3887 0.32 +2.4

Or see this region's nucleotide sequence