Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3620

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3619 and Psyr_3620 are separated by 69 nucleotidesPsyr_3620 and Psyr_3621 are separated by 135 nucleotides Psyr_3619: Psyr_3619 - Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal, at 4,303,040 to 4,304,713 _3619 Psyr_3620: Psyr_3620 - hypothetical protein, at 4,304,783 to 4,305,031 _3620 Psyr_3621: Psyr_3621 - conserved hypothetical protein, at 4,305,167 to 4,305,928 _3621 Position (kb) 4304 4305 4306Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4304.895 kb on - strand, within Psyr_3620at 4304.931 kb on - strand, within Psyr_3620at 4304.931 kb on - strand, within Psyr_3620at 4304.951 kb on - strand, within Psyr_3620at 4305.077 kb on + strandat 4305.077 kb on + strandat 4305.077 kb on + strandat 4305.164 kb on + strandat 4305.164 kb on + strandat 4305.165 kb on - strandat 4305.184 kb on + strandat 4305.342 kb on + strand, within Psyr_3621at 4305.492 kb on + strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.762 kb on + strand, within Psyr_3621at 4305.763 kb on - strand, within Psyr_3621at 4305.793 kb on + strand, within Psyr_3621at 4305.794 kb on - strand, within Psyr_3621at 4305.794 kb on - strand, within Psyr_3621at 4305.962 kb on + strandat 4306.008 kb on - strandat 4306.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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4,304,895 - Psyr_3620 0.45 -1.2
4,304,931 - Psyr_3620 0.59 -0.4
4,304,931 - Psyr_3620 0.59 -1.0
4,304,951 - Psyr_3620 0.67 +0.5
4,305,077 + -1.1
4,305,077 + -1.3
4,305,077 + -0.4
4,305,164 + -0.8
4,305,164 + -2.3
4,305,165 - +0.6
4,305,184 + -0.1
4,305,342 + Psyr_3621 0.23 -0.5
4,305,492 + Psyr_3621 0.43 +0.2
4,305,493 - Psyr_3621 0.43 -0.2
4,305,493 - Psyr_3621 0.43 -0.5
4,305,493 - Psyr_3621 0.43 -0.0
4,305,564 + Psyr_3621 0.52 +0.7
4,305,564 + Psyr_3621 0.52 +0.3
4,305,564 + Psyr_3621 0.52 -2.3
4,305,564 + Psyr_3621 0.52 +0.1
4,305,564 + Psyr_3621 0.52 +0.6
4,305,564 + Psyr_3621 0.52 +1.0
4,305,564 + Psyr_3621 0.52 -0.7
4,305,564 + Psyr_3621 0.52 +1.1
4,305,564 + Psyr_3621 0.52 -2.6
4,305,564 + Psyr_3621 0.52 -1.2
4,305,564 + Psyr_3621 0.52 -0.1
4,305,564 + Psyr_3621 0.52 -0.7
4,305,565 - Psyr_3621 0.52 +0.2
4,305,565 - Psyr_3621 0.52 -1.6
4,305,565 - Psyr_3621 0.52 +0.5
4,305,565 - Psyr_3621 0.52 -1.0
4,305,565 - Psyr_3621 0.52 -0.6
4,305,565 - Psyr_3621 0.52 -0.7
4,305,565 - Psyr_3621 0.52 -0.2
4,305,565 - Psyr_3621 0.52 -0.3
4,305,565 - Psyr_3621 0.52 +0.6
4,305,565 - Psyr_3621 0.52 +0.0
4,305,565 - Psyr_3621 0.52 -1.1
4,305,565 - Psyr_3621 0.52 -0.0
4,305,565 - Psyr_3621 0.52 +0.6
4,305,565 - Psyr_3621 0.52 -0.1
4,305,565 - Psyr_3621 0.52 +2.8
4,305,762 + Psyr_3621 0.78 +0.3
4,305,763 - Psyr_3621 0.78 -0.4
4,305,793 + Psyr_3621 0.82 -0.6
4,305,794 - Psyr_3621 0.82 +0.7
4,305,794 - Psyr_3621 0.82 -0.4
4,305,962 + -0.9
4,306,008 - -0.4
4,306,008 - -1.5

Or see this region's nucleotide sequence