Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3315

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3314 and Psyr_3315 are separated by 83 nucleotidesPsyr_3315 and Psyr_3316 are separated by 572 nucleotides Psyr_3314: Psyr_3314 - conserved hypothetical protein, at 3,966,313 to 3,967,245 _3314 Psyr_3315: Psyr_3315 - conserved hypothetical protein, at 3,967,329 to 3,967,673 _3315 Psyr_3316: Psyr_3316 - ISPsy8, transposase OrfA, at 3,968,246 to 3,968,761 _3316 Position (kb) 3967 3968Strain fitness (log2 ratio) -1 0 1 2at 3966.392 kb on - strandat 3966.443 kb on - strand, within Psyr_3314at 3966.443 kb on - strand, within Psyr_3314at 3966.496 kb on + strand, within Psyr_3314at 3966.496 kb on + strand, within Psyr_3314at 3966.574 kb on + strand, within Psyr_3314at 3966.574 kb on + strand, within Psyr_3314at 3966.694 kb on + strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.902 kb on - strand, within Psyr_3314at 3966.939 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.018 kb on + strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.019 kb on - strand, within Psyr_3314at 3967.021 kb on + strand, within Psyr_3314at 3967.022 kb on - strandat 3967.075 kb on + strand, within Psyr_3314at 3967.075 kb on + strand, within Psyr_3314at 3967.105 kb on + strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.106 kb on - strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.111 kb on + strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.112 kb on - strand, within Psyr_3314at 3967.299 kb on + strandat 3967.356 kb on + strandat 3967.356 kb on + strandat 3967.357 kb on - strandat 3967.403 kb on + strand, within Psyr_3315at 3967.409 kb on + strand, within Psyr_3315at 3967.682 kb on + strandat 3967.824 kb on + strandat 3967.875 kb on - strandat 3967.875 kb on - strandat 3967.879 kb on + strandat 3967.879 kb on + strandat 3967.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,966,392 - -0.2
3,966,443 - Psyr_3314 0.14 -1.2
3,966,443 - Psyr_3314 0.14 +1.2
3,966,496 + Psyr_3314 0.20 +2.7
3,966,496 + Psyr_3314 0.20 +0.6
3,966,574 + Psyr_3314 0.28 +0.1
3,966,574 + Psyr_3314 0.28 -1.0
3,966,694 + Psyr_3314 0.41 -0.0
3,966,902 - Psyr_3314 0.63 +0.0
3,966,902 - Psyr_3314 0.63 +0.3
3,966,902 - Psyr_3314 0.63 +1.5
3,966,902 - Psyr_3314 0.63 -0.3
3,966,939 + Psyr_3314 0.67 +0.3
3,967,018 + Psyr_3314 0.76 -0.5
3,967,018 + Psyr_3314 0.76 -0.7
3,967,018 + Psyr_3314 0.76 -0.8
3,967,018 + Psyr_3314 0.76 +0.3
3,967,018 + Psyr_3314 0.76 -1.2
3,967,018 + Psyr_3314 0.76 +1.8
3,967,019 - Psyr_3314 0.76 -0.6
3,967,019 - Psyr_3314 0.76 -0.3
3,967,019 - Psyr_3314 0.76 -0.1
3,967,019 - Psyr_3314 0.76 +0.4
3,967,019 - Psyr_3314 0.76 +0.6
3,967,021 + Psyr_3314 0.76 +0.0
3,967,022 - +0.7
3,967,075 + Psyr_3314 0.82 -0.8
3,967,075 + Psyr_3314 0.82 -0.8
3,967,105 + Psyr_3314 0.85 -1.4
3,967,106 - Psyr_3314 0.85 +0.6
3,967,106 - Psyr_3314 0.85 +0.5
3,967,106 - Psyr_3314 0.85 +0.6
3,967,111 + Psyr_3314 0.86 -0.7
3,967,111 + Psyr_3314 0.86 +0.3
3,967,111 + Psyr_3314 0.86 -0.3
3,967,111 + Psyr_3314 0.86 -0.2
3,967,111 + Psyr_3314 0.86 -0.1
3,967,111 + Psyr_3314 0.86 +0.1
3,967,111 + Psyr_3314 0.86 +0.8
3,967,112 - Psyr_3314 0.86 +0.2
3,967,112 - Psyr_3314 0.86 -0.5
3,967,112 - Psyr_3314 0.86 -0.1
3,967,112 - Psyr_3314 0.86 +1.3
3,967,112 - Psyr_3314 0.86 -0.3
3,967,112 - Psyr_3314 0.86 -0.2
3,967,299 + +0.2
3,967,356 + +0.3
3,967,356 + +0.8
3,967,357 - -0.1
3,967,403 + Psyr_3315 0.21 -1.3
3,967,409 + Psyr_3315 0.23 -0.4
3,967,682 + -1.2
3,967,824 + +0.5
3,967,875 - -0.5
3,967,875 - -1.0
3,967,879 + +0.1
3,967,879 + +0.6
3,967,879 + -0.7

Or see this region's nucleotide sequence