Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3282

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3281 and Psyr_3282 are separated by 125 nucleotidesPsyr_3282 and Psyr_3283 are separated by 256 nucleotidesPsyr_3283 and Psyr_3284 are separated by 9 nucleotides Psyr_3281: Psyr_3281 - Glycoside hydrolase, family 3, N-terminal, at 3,928,376 to 3,929,386 _3281 Psyr_3282: Psyr_3282 - transcriptional regulator, TetR family, at 3,929,512 to 3,930,228 _3282 Psyr_3283: Psyr_3283 - SOS-response transcriptional repressor, LexA, at 3,930,485 to 3,931,093 _3283 Psyr_3284: Psyr_3284 - SOS cell division inhibitor SulA, at 3,931,103 to 3,931,573 _3284 Position (kb) 3929 3930 3931Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3928.741 kb on - strand, within Psyr_3281at 3928.909 kb on + strand, within Psyr_3281at 3929.147 kb on + strand, within Psyr_3281at 3929.147 kb on + strand, within Psyr_3281at 3929.386 kb on + strandat 3929.398 kb on + strandat 3929.664 kb on + strand, within Psyr_3282at 3929.810 kb on + strand, within Psyr_3282at 3929.810 kb on + strandat 3929.810 kb on + strand, within Psyr_3282at 3929.811 kb on - strand, within Psyr_3282at 3929.831 kb on + strand, within Psyr_3282at 3929.831 kb on + strand, within Psyr_3282at 3929.831 kb on + strand, within Psyr_3282at 3929.831 kb on + strand, within Psyr_3282at 3929.831 kb on + strand, within Psyr_3282at 3929.831 kb on + strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3929.832 kb on - strand, within Psyr_3282at 3930.098 kb on + strand, within Psyr_3282at 3930.138 kb on + strand, within Psyr_3282at 3930.262 kb on + strandat 3930.262 kb on + strandat 3930.263 kb on - strandat 3930.263 kb on - strandat 3930.263 kb on - strandat 3930.263 kb on - strandat 3930.266 kb on + strandat 3930.334 kb on - strandat 3930.389 kb on - strandat 3930.443 kb on + strandat 3930.444 kb on - strandat 3930.444 kb on - strandat 3930.445 kb on + strandat 3930.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,928,741 - Psyr_3281 0.36 -2.9
3,928,909 + Psyr_3281 0.53 +0.5
3,929,147 + Psyr_3281 0.76 +0.2
3,929,147 + Psyr_3281 0.76 +0.8
3,929,386 + -1.8
3,929,398 + +1.8
3,929,664 + Psyr_3282 0.21 -1.6
3,929,810 + Psyr_3282 0.42 +0.8
3,929,810 + +0.2
3,929,810 + Psyr_3282 0.42 +1.2
3,929,811 - Psyr_3282 0.42 -3.3
3,929,831 + Psyr_3282 0.44 -0.4
3,929,831 + Psyr_3282 0.44 -0.2
3,929,831 + Psyr_3282 0.44 -1.6
3,929,831 + Psyr_3282 0.44 +0.8
3,929,831 + Psyr_3282 0.44 -0.3
3,929,831 + Psyr_3282 0.44 +0.2
3,929,832 - Psyr_3282 0.45 -0.8
3,929,832 - Psyr_3282 0.45 -1.2
3,929,832 - Psyr_3282 0.45 -3.0
3,929,832 - Psyr_3282 0.45 -0.4
3,929,832 - Psyr_3282 0.45 -0.7
3,929,832 - Psyr_3282 0.45 -0.4
3,929,832 - Psyr_3282 0.45 +0.8
3,929,832 - Psyr_3282 0.45 -0.6
3,929,832 - Psyr_3282 0.45 +0.0
3,929,832 - Psyr_3282 0.45 -2.3
3,929,832 - Psyr_3282 0.45 -2.0
3,930,098 + Psyr_3282 0.82 -0.4
3,930,138 + Psyr_3282 0.87 -1.7
3,930,262 + -0.7
3,930,262 + -1.6
3,930,263 - +0.5
3,930,263 - +0.3
3,930,263 - +1.2
3,930,263 - -0.4
3,930,266 + -2.2
3,930,334 - +0.4
3,930,389 - -1.2
3,930,443 + +1.4
3,930,444 - -1.7
3,930,444 - +0.4
3,930,445 + -0.3
3,930,446 - +0.5

Or see this region's nucleotide sequence