Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3180 and Psyr_3181 are separated by 48 nucleotides Psyr_3181 and Psyr_3182 are separated by 101 nucleotides Psyr_3182 and Psyr_3183 are separated by 117 nucleotides
Psyr_3180: Psyr_3180 - Leucyl/phenylalanyl-tRNA--protein transferase, at 3,808,879 to 3,809,568
_3180
Psyr_3181: Psyr_3181 - Arginyltransferase, at 3,809,617 to 3,810,324
_3181
Psyr_3182: Psyr_3182 - bacterial translation initiation factor 1 (bIF-1), at 3,810,426 to 3,810,644
_3182
Psyr_3183: Psyr_3183 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 3,810,762 to 3,813,035
_3183
Position (kb)
3809
3810
3811 Strain fitness (log2 ratio)
-2
-1
0
1 at 3808.682 kb on - strand at 3808.682 kb on - strand at 3808.715 kb on - strand at 3809.198 kb on - strand, within Psyr_3180 at 3809.239 kb on + strand, within Psyr_3180 at 3809.240 kb on - strand, within Psyr_3180 at 3809.240 kb on - strand, within Psyr_3180 at 3809.271 kb on + strand, within Psyr_3180 at 3809.271 kb on + strand, within Psyr_3180 at 3809.272 kb on - strand, within Psyr_3180 at 3809.315 kb on - strand, within Psyr_3180 at 3809.466 kb on + strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.467 kb on - strand, within Psyr_3180 at 3809.510 kb on - strand at 3809.579 kb on + strand at 3809.580 kb on - strand at 3809.580 kb on - strand at 3809.580 kb on - strand at 3809.645 kb on - strand at 3809.645 kb on - strand at 3809.729 kb on + strand, within Psyr_3181 at 3809.729 kb on + strand, within Psyr_3181 at 3809.729 kb on + strand, within Psyr_3181 at 3809.730 kb on - strand, within Psyr_3181 at 3809.932 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.953 kb on + strand, within Psyr_3181 at 3809.955 kb on + strand, within Psyr_3181 at 3809.955 kb on + strand, within Psyr_3181 at 3809.955 kb on + strand, within Psyr_3181 at 3810.124 kb on + strand, within Psyr_3181 at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.262 kb on + strand at 3810.406 kb on + strand at 3810.406 kb on + strand at 3810.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,808,682 - -0.0 3,808,682 - -1.0 3,808,715 - -1.1 3,809,198 - Psyr_3180 0.46 +0.5 3,809,239 + Psyr_3180 0.52 -0.5 3,809,240 - Psyr_3180 0.52 -0.5 3,809,240 - Psyr_3180 0.52 -0.4 3,809,271 + Psyr_3180 0.57 -1.6 3,809,271 + Psyr_3180 0.57 +1.2 3,809,272 - Psyr_3180 0.57 -0.6 3,809,315 - Psyr_3180 0.63 -1.2 3,809,466 + Psyr_3180 0.85 +0.2 3,809,467 - Psyr_3180 0.85 -0.4 3,809,467 - Psyr_3180 0.85 -0.2 3,809,510 - +0.3 3,809,579 + -0.4 3,809,580 - -0.6 3,809,580 - +0.2 3,809,580 - -1.0 3,809,645 - -0.3 3,809,645 - -0.7 3,809,729 + Psyr_3181 0.16 -0.1 3,809,729 + Psyr_3181 0.16 -0.5 3,809,729 + Psyr_3181 0.16 -1.2 3,809,730 - Psyr_3181 0.16 -0.1 3,809,932 + Psyr_3181 0.44 -0.1 3,809,953 + Psyr_3181 0.47 -0.8 3,809,953 + Psyr_3181 0.47 +1.2 3,809,953 + Psyr_3181 0.47 -0.2 3,809,953 + Psyr_3181 0.47 -1.3 3,809,955 + Psyr_3181 0.48 -0.4 3,809,955 + Psyr_3181 0.48 +0.5 3,809,955 + Psyr_3181 0.48 -0.9 3,810,124 + Psyr_3181 0.72 -2.2 3,810,262 + -0.6 3,810,262 + -0.6 3,810,262 + -2.4 3,810,262 + +0.2 3,810,262 + -0.9 3,810,262 + +1.1 3,810,406 + -2.3 3,810,406 + -1.0 3,810,672 - -0.0
Or see this region's nucleotide sequence