Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2467

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2465 and Psyr_2466 are separated by 70 nucleotidesPsyr_2466 and Psyr_2467 are separated by 96 nucleotidesPsyr_2467 and Psyr_2468 overlap by 4 nucleotidesPsyr_2468 and Psyr_2469 are separated by 14 nucleotides Psyr_2465: Psyr_2465 - Acyltransferase 3, at 2,857,032 to 2,858,054 _2465 Psyr_2466: Psyr_2466 - HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal, at 2,858,125 to 2,858,718 _2466 Psyr_2467: Psyr_2467 - 3-methylcrotonoyl-CoA carboxylase, alpha subunit, at 2,858,815 to 2,860,764 _2467 Psyr_2468: Psyr_2468 - Enoyl-CoA hydratase/isomerase, at 2,860,761 to 2,861,636 _2468 Psyr_2469: Psyr_2469 - Propionyl-CoA carboxylase, at 2,861,651 to 2,863,258 _2469 Position (kb) 2858 2859 2860 2861Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2857.836 kb on + strand, within Psyr_2465at 2857.845 kb on + strand, within Psyr_2465at 2857.912 kb on - strand, within Psyr_2465at 2857.912 kb on - strand, within Psyr_2465at 2857.912 kb on - strand, within Psyr_2465at 2857.965 kb on + strandat 2857.965 kb on + strandat 2857.966 kb on - strandat 2858.713 kb on + strandat 2858.713 kb on + strandat 2858.713 kb on + strandat 2858.713 kb on + strandat 2858.714 kb on - strandat 2859.104 kb on + strand, within Psyr_2467at 2859.105 kb on - strand, within Psyr_2467at 2859.605 kb on + strand, within Psyr_2467at 2859.606 kb on - strandat 2859.680 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.848 kb on + strand, within Psyr_2467at 2859.849 kb on - strand, within Psyr_2467at 2859.868 kb on + strand, within Psyr_2467at 2859.869 kb on - strand, within Psyr_2467at 2859.951 kb on - strand, within Psyr_2467at 2860.085 kb on + strand, within Psyr_2467at 2860.085 kb on + strand, within Psyr_2467at 2860.148 kb on + strand, within Psyr_2467at 2860.149 kb on - strand, within Psyr_2467at 2860.149 kb on - strand, within Psyr_2467at 2860.574 kb on + strandat 2860.574 kb on + strandat 2860.575 kb on - strandat 2860.575 kb on - strandat 2860.630 kb on - strandat 2861.141 kb on - strand, within Psyr_2468at 2861.347 kb on + strand, within Psyr_2468at 2861.347 kb on + strand, within Psyr_2468at 2861.347 kb on + strand, within Psyr_2468at 2861.348 kb on - strand, within Psyr_2468at 2861.392 kb on + strand, within Psyr_2468at 2861.393 kb on - strand, within Psyr_2468at 2861.393 kb on - strand, within Psyr_2468at 2861.497 kb on - strand, within Psyr_2468at 2861.497 kb on - strand, within Psyr_2468at 2861.611 kb on - strandat 2861.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,857,836 + Psyr_2465 0.79 -1.2
2,857,845 + Psyr_2465 0.79 -1.2
2,857,912 - Psyr_2465 0.86 +0.7
2,857,912 - Psyr_2465 0.86 +0.7
2,857,912 - Psyr_2465 0.86 +0.9
2,857,965 + -0.5
2,857,965 + -0.0
2,857,966 - +0.1
2,858,713 + -1.3
2,858,713 + -0.3
2,858,713 + -0.0
2,858,713 + -0.2
2,858,714 - +0.4
2,859,104 + Psyr_2467 0.15 +1.5
2,859,105 - Psyr_2467 0.15 -0.8
2,859,605 + Psyr_2467 0.41 +0.5
2,859,606 - +0.2
2,859,680 + Psyr_2467 0.44 -0.3
2,859,848 + Psyr_2467 0.53 +0.2
2,859,848 + Psyr_2467 0.53 -1.6
2,859,848 + Psyr_2467 0.53 -0.9
2,859,848 + Psyr_2467 0.53 -0.7
2,859,849 - Psyr_2467 0.53 -1.2
2,859,868 + Psyr_2467 0.54 +0.2
2,859,869 - Psyr_2467 0.54 -1.2
2,859,951 - Psyr_2467 0.58 -0.8
2,860,085 + Psyr_2467 0.65 -0.8
2,860,085 + Psyr_2467 0.65 +1.2
2,860,148 + Psyr_2467 0.68 -0.3
2,860,149 - Psyr_2467 0.68 -1.8
2,860,149 - Psyr_2467 0.68 -1.5
2,860,574 + -0.1
2,860,574 + -0.0
2,860,575 - -0.4
2,860,575 - -0.4
2,860,630 - +0.6
2,861,141 - Psyr_2468 0.43 +1.5
2,861,347 + Psyr_2468 0.67 -0.3
2,861,347 + Psyr_2468 0.67 -1.3
2,861,347 + Psyr_2468 0.67 -1.3
2,861,348 - Psyr_2468 0.67 +0.2
2,861,392 + Psyr_2468 0.72 -0.1
2,861,393 - Psyr_2468 0.72 +2.4
2,861,393 - Psyr_2468 0.72 +2.5
2,861,497 - Psyr_2468 0.84 +2.5
2,861,497 - Psyr_2468 0.84 +2.5
2,861,611 - +3.2
2,861,678 - -0.5

Or see this region's nucleotide sequence