Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2297

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2296 and Psyr_2297 are separated by 66 nucleotidesPsyr_2297 and Psyr_2298 overlap by 8 nucleotides Psyr_2296: Psyr_2296 - Aldo/keto reductase, at 2,668,183 to 2,669,220 _2296 Psyr_2297: Psyr_2297 - glucose 1-dehydrogenase, at 2,669,287 to 2,670,087 _2297 Psyr_2298: Psyr_2298 - Glycoside hydrolase, family 15, at 2,670,080 to 2,671,906 _2298 Position (kb) 2669 2670 2671Strain fitness (log2 ratio) -2 -1 0 1at 2668.340 kb on - strand, within Psyr_2296at 2668.366 kb on + strand, within Psyr_2296at 2668.367 kb on - strand, within Psyr_2296at 2668.367 kb on - strand, within Psyr_2296at 2668.367 kb on - strand, within Psyr_2296at 2668.408 kb on + strand, within Psyr_2296at 2668.409 kb on - strand, within Psyr_2296at 2668.802 kb on - strand, within Psyr_2296at 2668.876 kb on + strand, within Psyr_2296at 2668.912 kb on + strand, within Psyr_2296at 2668.913 kb on - strand, within Psyr_2296at 2668.973 kb on - strand, within Psyr_2296at 2669.008 kb on + strand, within Psyr_2296at 2669.063 kb on - strand, within Psyr_2296at 2669.063 kb on - strand, within Psyr_2296at 2669.259 kb on + strandat 2669.259 kb on + strandat 2669.260 kb on - strandat 2669.260 kb on - strandat 2669.262 kb on + strandat 2669.262 kb on + strandat 2669.262 kb on + strandat 2669.262 kb on + strandat 2669.263 kb on - strandat 2669.263 kb on - strandat 2669.398 kb on + strand, within Psyr_2297at 2669.399 kb on - strand, within Psyr_2297at 2669.399 kb on - strand, within Psyr_2297at 2669.617 kb on - strand, within Psyr_2297at 2669.780 kb on - strand, within Psyr_2297at 2670.016 kb on + strandat 2670.017 kb on - strandat 2670.017 kb on - strandat 2670.299 kb on + strand, within Psyr_2298at 2670.299 kb on + strand, within Psyr_2298at 2670.299 kb on + strand, within Psyr_2298at 2670.300 kb on - strand, within Psyr_2298at 2670.740 kb on + strand, within Psyr_2298at 2670.741 kb on - strand, within Psyr_2298at 2670.885 kb on - strand, within Psyr_2298at 2670.917 kb on + strand, within Psyr_2298at 2670.917 kb on + strand, within Psyr_2298at 2670.918 kb on - strand, within Psyr_2298at 2670.918 kb on - strand, within Psyr_2298at 2670.918 kb on - strand, within Psyr_2298at 2670.918 kb on - strand, within Psyr_2298at 2670.918 kb on - strand, within Psyr_2298

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,668,340 - Psyr_2296 0.15 +0.0
2,668,366 + Psyr_2296 0.18 +0.1
2,668,367 - Psyr_2296 0.18 -0.9
2,668,367 - Psyr_2296 0.18 -0.7
2,668,367 - Psyr_2296 0.18 +0.2
2,668,408 + Psyr_2296 0.22 +0.1
2,668,409 - Psyr_2296 0.22 -0.9
2,668,802 - Psyr_2296 0.60 -0.8
2,668,876 + Psyr_2296 0.67 -0.3
2,668,912 + Psyr_2296 0.70 +0.6
2,668,913 - Psyr_2296 0.70 -0.5
2,668,973 - Psyr_2296 0.76 -0.3
2,669,008 + Psyr_2296 0.79 -0.3
2,669,063 - Psyr_2296 0.85 +0.1
2,669,063 - Psyr_2296 0.85 -1.6
2,669,259 + -0.1
2,669,259 + -0.3
2,669,260 - -1.0
2,669,260 - +0.2
2,669,262 + +0.5
2,669,262 + -2.4
2,669,262 + +0.6
2,669,262 + -1.1
2,669,263 - -0.4
2,669,263 - -0.2
2,669,398 + Psyr_2297 0.14 -0.4
2,669,399 - Psyr_2297 0.14 -0.5
2,669,399 - Psyr_2297 0.14 -0.8
2,669,617 - Psyr_2297 0.41 -1.4
2,669,780 - Psyr_2297 0.62 -0.3
2,670,016 + -1.1
2,670,017 - -1.9
2,670,017 - +0.4
2,670,299 + Psyr_2298 0.12 +0.6
2,670,299 + Psyr_2298 0.12 +0.6
2,670,299 + Psyr_2298 0.12 +1.6
2,670,300 - Psyr_2298 0.12 +0.2
2,670,740 + Psyr_2298 0.36 -0.2
2,670,741 - Psyr_2298 0.36 +0.3
2,670,885 - Psyr_2298 0.44 +0.2
2,670,917 + Psyr_2298 0.46 -0.5
2,670,917 + Psyr_2298 0.46 -0.3
2,670,918 - Psyr_2298 0.46 +1.2
2,670,918 - Psyr_2298 0.46 +0.3
2,670,918 - Psyr_2298 0.46 +0.0
2,670,918 - Psyr_2298 0.46 -0.0
2,670,918 - Psyr_2298 0.46 +1.4

Or see this region's nucleotide sequence