Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2202

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2200 and Psyr_2201 are separated by 22 nucleotidesPsyr_2201 and Psyr_2202 are separated by 2 nucleotidesPsyr_2202 and Psyr_2203 overlap by 4 nucleotides Psyr_2200: Psyr_2200 - UreE urease accessory, N-terminal, at 2,557,668 to 2,558,108 _2200 Psyr_2201: Psyr_2201 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 2,558,131 to 2,558,820 _2201 Psyr_2202: Psyr_2202 - ABC transporter, at 2,558,823 to 2,559,560 _2202 Psyr_2203: Psyr_2203 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 2,559,557 to 2,560,699 _2203 Position (kb) 2558 2559 2560Strain fitness (log2 ratio) -1 0 1at 2557.849 kb on + strand, within Psyr_2200at 2557.850 kb on - strand, within Psyr_2200at 2558.474 kb on + strand, within Psyr_2201at 2558.486 kb on + strand, within Psyr_2201at 2558.486 kb on + strand, within Psyr_2201at 2558.487 kb on - strand, within Psyr_2201at 2558.609 kb on + strand, within Psyr_2201at 2558.792 kb on + strandat 2558.792 kb on + strandat 2558.792 kb on + strandat 2558.792 kb on + strandat 2558.793 kb on - strandat 2558.885 kb on - strandat 2559.481 kb on + strand, within Psyr_2202at 2559.481 kb on + strand, within Psyr_2202at 2559.481 kb on + strand, within Psyr_2202at 2559.481 kb on + strand, within Psyr_2202at 2559.482 kb on - strand, within Psyr_2202at 2559.482 kb on - strand, within Psyr_2202at 2559.654 kb on + strandat 2559.655 kb on - strandat 2559.655 kb on - strandat 2559.762 kb on + strand, within Psyr_2203at 2559.763 kb on - strand, within Psyr_2203at 2560.026 kb on + strand, within Psyr_2203at 2560.203 kb on + strand, within Psyr_2203at 2560.209 kb on + strand, within Psyr_2203at 2560.209 kb on + strand, within Psyr_2203at 2560.404 kb on + strand, within Psyr_2203at 2560.405 kb on - strand, within Psyr_2203at 2560.405 kb on - strand, within Psyr_2203at 2560.419 kb on + strand, within Psyr_2203at 2560.419 kb on + strand, within Psyr_2203at 2560.419 kb on + strand, within Psyr_2203at 2560.420 kb on - strand, within Psyr_2203at 2560.420 kb on - strand, within Psyr_2203at 2560.519 kb on - strand, within Psyr_2203

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,557,849 + Psyr_2200 0.41 -0.0
2,557,850 - Psyr_2200 0.41 +0.5
2,558,474 + Psyr_2201 0.50 -1.6
2,558,486 + Psyr_2201 0.51 -0.5
2,558,486 + Psyr_2201 0.51 -1.2
2,558,487 - Psyr_2201 0.52 -0.3
2,558,609 + Psyr_2201 0.69 -0.9
2,558,792 + -0.2
2,558,792 + -0.5
2,558,792 + +1.2
2,558,792 + -0.3
2,558,793 - +0.8
2,558,885 - -1.2
2,559,481 + Psyr_2202 0.89 -0.3
2,559,481 + Psyr_2202 0.89 -1.2
2,559,481 + Psyr_2202 0.89 -1.0
2,559,481 + Psyr_2202 0.89 -1.6
2,559,482 - Psyr_2202 0.89 -0.5
2,559,482 - Psyr_2202 0.89 +0.4
2,559,654 + +0.6
2,559,655 - -0.1
2,559,655 - -1.3
2,559,762 + Psyr_2203 0.18 +0.2
2,559,763 - Psyr_2203 0.18 -0.4
2,560,026 + Psyr_2203 0.41 -0.1
2,560,203 + Psyr_2203 0.57 -0.6
2,560,209 + Psyr_2203 0.57 -1.5
2,560,209 + Psyr_2203 0.57 +0.3
2,560,404 + Psyr_2203 0.74 +0.3
2,560,405 - Psyr_2203 0.74 +0.6
2,560,405 - Psyr_2203 0.74 -0.7
2,560,419 + Psyr_2203 0.75 +0.4
2,560,419 + Psyr_2203 0.75 -0.3
2,560,419 + Psyr_2203 0.75 +1.5
2,560,420 - Psyr_2203 0.76 +1.4
2,560,420 - Psyr_2203 0.76 -0.0
2,560,519 - Psyr_2203 0.84 +0.5

Or see this region's nucleotide sequence