Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1946

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1945 and Psyr_1946 are separated by 164 nucleotidesPsyr_1946 and Psyr_1947 are separated by 81 nucleotides Psyr_1945: Psyr_1945 - Non-ribosomal peptide synthase:Amino acid adenylation, at 2,217,771 to 2,230,781 _1945 Psyr_1946: Psyr_1946 - diaminobutyrate aminotransferase apoenzyme, at 2,230,946 to 2,232,358 _1946 Psyr_1947: Psyr_1947 - MbtH-like protein, at 2,232,440 to 2,232,658 _1947 Position (kb) 2230 2231 2232 2233Strain fitness (log2 ratio) -1 0 1at 2230.017 kb on + strandat 2230.018 kb on - strandat 2230.137 kb on + strandat 2230.138 kb on - strandat 2230.138 kb on - strandat 2230.138 kb on - strandat 2230.368 kb on + strandat 2230.369 kb on - strandat 2230.369 kb on - strandat 2230.640 kb on + strandat 2230.904 kb on + strandat 2230.904 kb on + strandat 2230.905 kb on - strandat 2231.015 kb on + strandat 2231.254 kb on + strand, within Psyr_1946at 2231.255 kb on - strand, within Psyr_1946at 2231.994 kb on - strand, within Psyr_1946at 2232.010 kb on + strand, within Psyr_1946at 2232.261 kb on + strandat 2232.262 kb on - strandat 2232.369 kb on + strandat 2232.369 kb on + strandat 2232.370 kb on - strandat 2232.375 kb on + strandat 2232.375 kb on + strandat 2232.391 kb on - strandat 2232.391 kb on - strandat 2232.391 kb on - strandat 2232.503 kb on + strand, within Psyr_1947at 2232.504 kb on - strand, within Psyr_1947at 2232.522 kb on - strand, within Psyr_1947at 2232.522 kb on - strand, within Psyr_1947at 2232.587 kb on + strand, within Psyr_1947at 2232.801 kb on - strandat 2232.817 kb on - strandat 2232.983 kb on - strandat 2233.059 kb on + strandat 2233.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,230,017 + -0.0
2,230,018 - -1.0
2,230,137 + -0.3
2,230,138 - +0.1
2,230,138 - +1.1
2,230,138 - -0.4
2,230,368 + -0.0
2,230,369 - +1.3
2,230,369 - -0.3
2,230,640 + -0.3
2,230,904 + -0.0
2,230,904 + +0.6
2,230,905 - -0.5
2,231,015 + +0.2
2,231,254 + Psyr_1946 0.22 -1.6
2,231,255 - Psyr_1946 0.22 -0.7
2,231,994 - Psyr_1946 0.74 +1.0
2,232,010 + Psyr_1946 0.75 +0.1
2,232,261 + -0.2
2,232,262 - +0.8
2,232,369 + -0.3
2,232,369 + -0.6
2,232,370 - +0.0
2,232,375 + -0.4
2,232,375 + +0.9
2,232,391 - +1.2
2,232,391 - +0.8
2,232,391 - +0.2
2,232,503 + Psyr_1947 0.29 -0.6
2,232,504 - Psyr_1947 0.29 -0.5
2,232,522 - Psyr_1947 0.37 -0.4
2,232,522 - Psyr_1947 0.37 -0.4
2,232,587 + Psyr_1947 0.67 +0.6
2,232,801 - +0.8
2,232,817 - -1.3
2,232,983 - -0.2
2,233,059 + +0.9
2,233,060 - -1.0

Or see this region's nucleotide sequence