Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1720

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1718 and Psyr_1719 overlap by 8 nucleotidesPsyr_1719 and Psyr_1720 overlap by 4 nucleotidesPsyr_1720 and Psyr_1721 are separated by 4 nucleotides Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003 _1718 Psyr_1719: Psyr_1719 - conserved hypothetical protein, at 1,948,996 to 1,949,490 _1719 Psyr_1720: Psyr_1720 - Protein of unknown function DUF58, at 1,949,487 to 1,950,431 _1720 Psyr_1721: Psyr_1721 - moxR protein, putative, at 1,950,436 to 1,951,395 _1721 Position (kb) 1949 1950 1951Strain fitness (log2 ratio) -3 -2 -1 0 1at 1948.547 kb on - strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718at 1949.078 kb on + strand, within Psyr_1719at 1949.155 kb on - strand, within Psyr_1719at 1949.170 kb on - strand, within Psyr_1719at 1949.262 kb on - strand, within Psyr_1719at 1949.521 kb on + strandat 1949.996 kb on - strand, within Psyr_1720at 1949.996 kb on - strand, within Psyr_1720at 1950.200 kb on + strand, within Psyr_1720at 1950.201 kb on - strand, within Psyr_1720at 1950.250 kb on + strand, within Psyr_1720at 1950.251 kb on - strand, within Psyr_1720at 1950.722 kb on + strand, within Psyr_1721at 1950.722 kb on + strand, within Psyr_1721at 1950.723 kb on - strand, within Psyr_1721at 1950.723 kb on - strand, within Psyr_1721at 1950.746 kb on + strand, within Psyr_1721at 1950.746 kb on + strand, within Psyr_1721at 1950.746 kb on + strand, within Psyr_1721at 1950.747 kb on - strand, within Psyr_1721at 1950.747 kb on - strand, within Psyr_1721at 1950.747 kb on - strand, within Psyr_1721at 1950.995 kb on + strand, within Psyr_1721at 1950.995 kb on + strand, within Psyr_1721at 1950.995 kb on + strand, within Psyr_1721at 1950.996 kb on - strand, within Psyr_1721at 1950.996 kb on - strand, within Psyr_1721

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,948,547 - Psyr_1718 0.57 -0.1
1,948,547 - Psyr_1718 0.57 +0.3
1,949,078 + Psyr_1719 0.17 -2.8
1,949,155 - Psyr_1719 0.32 +0.9
1,949,170 - Psyr_1719 0.35 -0.2
1,949,262 - Psyr_1719 0.54 +0.2
1,949,521 + -0.4
1,949,996 - Psyr_1720 0.54 -0.7
1,949,996 - Psyr_1720 0.54 -2.3
1,950,200 + Psyr_1720 0.75 -0.0
1,950,201 - Psyr_1720 0.76 -0.0
1,950,250 + Psyr_1720 0.81 +0.1
1,950,251 - Psyr_1720 0.81 -1.1
1,950,722 + Psyr_1721 0.30 -0.2
1,950,722 + Psyr_1721 0.30 +0.2
1,950,723 - Psyr_1721 0.30 +0.2
1,950,723 - Psyr_1721 0.30 +0.8
1,950,746 + Psyr_1721 0.32 -0.4
1,950,746 + Psyr_1721 0.32 +0.6
1,950,746 + Psyr_1721 0.32 +0.2
1,950,747 - Psyr_1721 0.32 +0.5
1,950,747 - Psyr_1721 0.32 +0.3
1,950,747 - Psyr_1721 0.32 +1.0
1,950,995 + Psyr_1721 0.58 +1.0
1,950,995 + Psyr_1721 0.58 -0.2
1,950,995 + Psyr_1721 0.58 -0.1
1,950,996 - Psyr_1721 0.58 -1.3
1,950,996 - Psyr_1721 0.58 +0.6

Or see this region's nucleotide sequence