Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1645

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1642 and Psyr_1643 are separated by 31 nucleotidesPsyr_1643 and Psyr_1644 are separated by 13 nucleotidesPsyr_1644 and Psyr_1645 are separated by 34 nucleotidesPsyr_1645 and Psyr_1646 are separated by 116 nucleotides Psyr_1642: Psyr_1642 - Maf-like protein, at 1,849,005 to 1,849,658 _1642 Psyr_1643: Psyr_1643 - Protein of unknown function DUF177, at 1,849,690 to 1,850,217 _1643 Psyr_1644: Psyr_1644 - LSU ribosomal protein L32P, at 1,850,231 to 1,850,413 _1644 Psyr_1645: Psyr_1645 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 1,850,448 to 1,851,440 _1645 Psyr_1646: Psyr_1646 - [Acyl-carrier-protein] S-malonyltransferase, at 1,851,557 to 1,852,495 _1646 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1849.449 kb on + strand, within Psyr_1642at 1849.450 kb on - strand, within Psyr_1642at 1849.614 kb on - strandat 1850.507 kb on + strandat 1850.508 kb on - strandat 1851.020 kb on - strand, within Psyr_1645at 1851.039 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.043 kb on - strand, within Psyr_1645at 1851.051 kb on + strand, within Psyr_1645at 1851.052 kb on - strand, within Psyr_1645at 1851.052 kb on - strand, within Psyr_1645at 1851.270 kb on - strand, within Psyr_1645at 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.487 kb on + strandat 1851.492 kb on + strandat 1851.492 kb on + strandat 1851.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,849,449 + Psyr_1642 0.68 -0.2
1,849,450 - Psyr_1642 0.68 -2.3
1,849,614 - -0.8
1,850,507 + +1.8
1,850,508 - -3.2
1,851,020 - Psyr_1645 0.58 +0.2
1,851,039 - Psyr_1645 0.60 -2.3
1,851,043 - Psyr_1645 0.60 -0.4
1,851,043 - Psyr_1645 0.60 -1.4
1,851,043 - Psyr_1645 0.60 -0.8
1,851,043 - Psyr_1645 0.60 -1.2
1,851,043 - Psyr_1645 0.60 +0.7
1,851,043 - Psyr_1645 0.60 -0.5
1,851,043 - Psyr_1645 0.60 -1.3
1,851,051 + Psyr_1645 0.61 +0.2
1,851,052 - Psyr_1645 0.61 -1.2
1,851,052 - Psyr_1645 0.61 +1.6
1,851,270 - Psyr_1645 0.83 -0.2
1,851,487 + -0.7
1,851,487 + +0.2
1,851,487 + -1.0
1,851,487 + -0.6
1,851,487 + -0.6
1,851,487 + +1.3
1,851,487 + +0.7
1,851,487 + -0.7
1,851,487 + +0.9
1,851,487 + -0.8
1,851,492 + -0.1
1,851,492 + -1.3
1,851,538 + -0.4

Or see this region's nucleotide sequence