Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1638

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1637 and Psyr_1638 are separated by 154 nucleotidesPsyr_1638 and Psyr_1639 are separated by 669 nucleotides Psyr_1637: Psyr_1637 - UDP-N-acetylmuramate dehydrogenase, at 1,841,112 to 1,842,131 _1637 Psyr_1638: Psyr_1638 - RNAse E, at 1,842,286 to 1,845,648 _1638 Psyr_1639: Psyr_1639 - ribosomal large subunit pseudouridine synthase C, at 1,846,318 to 1,847,274 _1639 Position (kb) 1842 1843 1844 1845 1846Strain fitness (log2 ratio) -1 0 1at 1842.632 kb on + strand, within Psyr_1638at 1842.633 kb on - strand, within Psyr_1638at 1842.633 kb on - strand, within Psyr_1638at 1842.633 kb on - strand, within Psyr_1638at 1842.788 kb on - strand, within Psyr_1638at 1842.788 kb on - strand, within Psyr_1638at 1842.788 kb on - strand, within Psyr_1638at 1846.132 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.278 kb on - strandat 1846.278 kb on - strandat 1846.306 kb on - strandat 1846.411 kb on + strandat 1846.412 kb on - strandat 1846.499 kb on - strand, within Psyr_1639at 1846.499 kb on - strand, within Psyr_1639at 1846.612 kb on + strand, within Psyr_1639at 1846.613 kb on - strand, within Psyr_1639at 1846.613 kb on - strand, within Psyr_1639at 1846.630 kb on - strand, within Psyr_1639

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,842,632 + Psyr_1638 0.10 -0.4
1,842,633 - Psyr_1638 0.10 +0.2
1,842,633 - Psyr_1638 0.10 -0.8
1,842,633 - Psyr_1638 0.10 -1.4
1,842,788 - Psyr_1638 0.15 -0.4
1,842,788 - Psyr_1638 0.15 -0.8
1,842,788 - Psyr_1638 0.15 -0.4
1,846,132 - -0.2
1,846,265 - +1.5
1,846,265 - -1.1
1,846,265 - +0.9
1,846,265 - -0.3
1,846,265 - +0.7
1,846,265 - +0.7
1,846,278 - +0.2
1,846,278 - +0.6
1,846,306 - -1.7
1,846,411 + -0.3
1,846,412 - +0.2
1,846,499 - Psyr_1639 0.19 -0.5
1,846,499 - Psyr_1639 0.19 +0.2
1,846,612 + Psyr_1639 0.31 -1.3
1,846,613 - Psyr_1639 0.31 -1.2
1,846,613 - Psyr_1639 0.31 +0.6
1,846,630 - Psyr_1639 0.33 -0.2

Or see this region's nucleotide sequence