Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0674

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0673 and Psyr_0674 are separated by 532 nucleotidesPsyr_0674 and Psyr_0675 are separated by 32 nucleotidesPsyr_0675 and Psyr_0676 are separated by 94 nucleotides Psyr_0673: Psyr_0673 - nucleoside ABC transporter ATP-binding protein, at 762,487 to 764,040 _0673 Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166 _0674 Psyr_0675: Psyr_0675 - transcriptional regulator, TetR family, at 765,199 to 765,861 _0675 Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353 _0676 Position (kb) 764 765 766Strain fitness (log2 ratio) -2 -1 0 1at 763.647 kb on + strand, within Psyr_0673at 763.652 kb on + strand, within Psyr_0673at 763.874 kb on + strand, within Psyr_0673at 763.874 kb on + strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.875 kb on - strand, within Psyr_0673at 763.999 kb on - strandat 764.257 kb on - strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.333 kb on - strandat 764.361 kb on - strandat 764.376 kb on - strandat 764.391 kb on + strandat 764.392 kb on - strandat 764.401 kb on + strandat 764.512 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.550 kb on + strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.844 kb on + strand, within Psyr_0674at 764.845 kb on - strand, within Psyr_0674at 764.886 kb on + strand, within Psyr_0674at 765.158 kb on - strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.333 kb on - strand, within Psyr_0675at 765.353 kb on - strand, within Psyr_0675at 765.464 kb on + strand, within Psyr_0675at 765.464 kb on + strand, within Psyr_0675at 765.558 kb on + strand, within Psyr_0675at 765.558 kb on + strand, within Psyr_0675at 765.559 kb on - strand, within Psyr_0675at 765.560 kb on + strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.667 kb on - strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.680 kb on + strand, within Psyr_0675at 765.807 kb on + strandat 765.807 kb on + strandat 765.883 kb on - strandat 765.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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763,647 + Psyr_0673 0.75 +0.8
763,652 + Psyr_0673 0.75 +0.2
763,874 + Psyr_0673 0.89 -0.2
763,874 + Psyr_0673 0.89 +0.0
763,875 - Psyr_0673 0.89 -0.4
763,875 - Psyr_0673 0.89 +0.2
763,875 - Psyr_0673 0.89 +0.0
763,875 - Psyr_0673 0.89 -0.1
763,875 - Psyr_0673 0.89 -0.4
763,999 - +0.2
764,257 - -2.1
764,332 + +0.0
764,332 + +0.3
764,332 + +0.6
764,332 + +0.2
764,332 + -0.9
764,333 - +0.1
764,361 - +0.6
764,376 - -0.3
764,391 + +0.2
764,392 - -1.2
764,401 + -0.0
764,512 + +0.1
764,533 + -0.1
764,533 + +0.1
764,533 + -0.1
764,533 + -0.1
764,534 - -1.0
764,534 - -0.4
764,534 - -0.2
764,534 - -0.4
764,534 - -1.1
764,534 - -0.0
764,550 + -1.4
764,551 - -0.4
764,551 - +0.7
764,551 - -0.4
764,551 - +0.4
764,551 - -0.2
764,551 - -0.4
764,844 + Psyr_0674 0.46 -2.7
764,845 - Psyr_0674 0.46 -0.1
764,886 + Psyr_0674 0.53 -0.7
765,158 - +0.1
765,200 + -0.0
765,200 + -0.0
765,200 + +1.7
765,200 + +0.1
765,200 + -1.6
765,201 - -0.5
765,201 - +0.7
765,201 - +0.2
765,201 - -0.8
765,201 - +0.1
765,333 - Psyr_0675 0.20 +0.3
765,353 - Psyr_0675 0.23 -0.1
765,464 + Psyr_0675 0.40 +0.2
765,464 + Psyr_0675 0.40 -1.0
765,558 + Psyr_0675 0.54 +0.3
765,558 + Psyr_0675 0.54 -0.9
765,559 - Psyr_0675 0.54 +0.5
765,560 + Psyr_0675 0.54 -1.3
765,561 - Psyr_0675 0.55 -0.6
765,561 - Psyr_0675 0.55 +0.3
765,561 - Psyr_0675 0.55 +1.4
765,653 + Psyr_0675 0.68 +0.9
765,653 + Psyr_0675 0.68 -0.4
765,653 + Psyr_0675 0.68 -1.6
765,653 + Psyr_0675 0.68 +0.4
765,654 - Psyr_0675 0.69 +0.2
765,654 - Psyr_0675 0.69 +0.2
765,654 - Psyr_0675 0.69 +1.0
765,654 - Psyr_0675 0.69 -0.4
765,667 - Psyr_0675 0.71 +1.5
765,677 + Psyr_0675 0.72 -0.1
765,677 + Psyr_0675 0.72 -1.6
765,677 + Psyr_0675 0.72 +0.1
765,677 + Psyr_0675 0.72 -0.7
765,677 + Psyr_0675 0.72 +1.1
765,677 + Psyr_0675 0.72 +0.6
765,677 + Psyr_0675 0.72 -0.1
765,677 + Psyr_0675 0.72 -0.1
765,677 + Psyr_0675 0.72 +0.5
765,677 + Psyr_0675 0.72 +0.1
765,677 + Psyr_0675 0.72 -0.2
765,677 + Psyr_0675 0.72 -0.1
765,677 + Psyr_0675 0.72 -0.1
765,678 - Psyr_0675 0.72 -0.9
765,678 - Psyr_0675 0.72 -0.4
765,678 - Psyr_0675 0.72 -0.9
765,678 - Psyr_0675 0.72 -0.0
765,678 - Psyr_0675 0.72 -0.7
765,678 - Psyr_0675 0.72 +0.3
765,678 - Psyr_0675 0.72 +0.3
765,678 - Psyr_0675 0.72 +0.1
765,678 - Psyr_0675 0.72 -0.1
765,678 - Psyr_0675 0.72 +1.6
765,680 + Psyr_0675 0.73 -1.6
765,807 + +1.4
765,807 + -1.8
765,883 - -0.2
765,904 + +0.5

Or see this region's nucleotide sequence