Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0571 and Psyr_0572 are separated by 93 nucleotides Psyr_0572 and Psyr_0573 are separated by 12 nucleotides Psyr_0573 and Psyr_0574 are separated by 96 nucleotides
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193
_0573
Psyr_0574: Psyr_0574 - protease FtsH subunit HflK, at 652,290 to 653,492
_0574
Position (kb) 650
651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.062 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.218 kb on + strand, within Psyr_0571 at 650.428 kb on + strand at 650.432 kb on + strand at 650.432 kb on + strand at 650.536 kb on + strand at 650.536 kb on + strand at 650.544 kb on + strand at 650.585 kb on + strand at 650.588 kb on + strand at 650.593 kb on + strand at 650.881 kb on - strand at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.204 kb on - strand, within Psyr_0573 at 651.508 kb on - strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.632 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.880 kb on + strand, within Psyr_0573 at 651.880 kb on + strand, within Psyr_0573 at 652.191 kb on + strand at 652.192 kb on - strand at 652.192 kb on - strand at 652.213 kb on + strand at 652.235 kb on + strand at 652.235 kb on + strand at 652.236 kb on - strand at 652.322 kb on + strand at 652.528 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.550 kb on + strand, within Psyr_0574 at 652.551 kb on - strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.695 kb on + strand, within Psyr_0574 at 652.762 kb on - strand, within Psyr_0574 at 653.064 kb on - strand, within Psyr_0574 at 653.123 kb on + strand, within Psyr_0574 at 653.192 kb on + strand, within Psyr_0574
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 650,015 + Psyr_0571 0.47 +1.6 650,016 - Psyr_0571 0.48 +2.7 650,016 - Psyr_0571 0.48 +2.2 650,016 - Psyr_0571 0.48 -0.4 650,016 - Psyr_0571 0.48 +1.2 650,062 - Psyr_0571 0.52 -0.4 650,154 + Psyr_0571 0.62 +0.2 650,155 - Psyr_0571 0.62 +1.2 650,218 + Psyr_0571 0.68 +1.2 650,428 + +0.2 650,432 + +2.2 650,432 + +2.7 650,536 + +0.2 650,536 + +0.4 650,544 + +0.7 650,585 + +1.3 650,588 + -0.9 650,593 + +0.0 650,881 - -0.4 651,060 + Psyr_0573 0.13 -0.7 651,060 + Psyr_0573 0.13 -2.4 651,060 + Psyr_0573 0.13 +0.1 651,061 - Psyr_0573 0.13 -0.6 651,061 - Psyr_0573 0.13 -0.4 651,061 - Psyr_0573 0.13 -2.5 651,061 - Psyr_0573 0.13 -1.2 651,061 - Psyr_0573 0.13 -0.3 651,204 - Psyr_0573 0.24 -2.0 651,508 - Psyr_0573 0.47 -1.1 651,509 + Psyr_0573 0.47 -0.4 651,509 + Psyr_0573 0.47 -0.6 651,509 + Psyr_0573 0.47 -1.4 651,632 + Psyr_0573 0.57 -0.2 651,840 + Psyr_0573 0.73 -0.8 651,840 + Psyr_0573 0.73 -0.7 651,840 + Psyr_0573 0.73 -0.7 651,840 + Psyr_0573 0.73 -1.3 651,840 + Psyr_0573 0.73 +3.5 651,840 + Psyr_0573 0.73 +1.5 651,841 - Psyr_0573 0.73 +0.2 651,841 - Psyr_0573 0.73 +0.2 651,841 - Psyr_0573 0.73 +0.2 651,841 - Psyr_0573 0.73 -1.6 651,841 - Psyr_0573 0.73 +1.2 651,880 + Psyr_0573 0.76 +0.6 651,880 + Psyr_0573 0.76 +0.5 652,191 + +0.0 652,192 - +0.6 652,192 - +1.2 652,213 + +1.4 652,235 + -0.2 652,235 + -1.0 652,236 - +1.2 652,322 + +1.2 652,528 + Psyr_0574 0.20 +1.2 652,548 + Psyr_0574 0.21 -0.8 652,548 + Psyr_0574 0.21 +1.2 652,548 + Psyr_0574 0.21 +1.2 652,548 + Psyr_0574 0.21 -0.8 652,550 + Psyr_0574 0.22 +0.2 652,551 - Psyr_0574 0.22 +0.0 652,560 + Psyr_0574 0.22 -0.8 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 +1.2 652,560 + Psyr_0574 0.22 +1.2 652,560 + Psyr_0574 0.22 +1.2 652,560 + Psyr_0574 0.22 -2.0 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 +0.6 652,560 + Psyr_0574 0.22 -1.2 652,561 - Psyr_0574 0.23 +1.2 652,561 - Psyr_0574 0.23 +0.2 652,561 - Psyr_0574 0.23 +0.7 652,641 + Psyr_0574 0.29 +1.2 652,641 + Psyr_0574 0.29 -1.6 652,665 + Psyr_0574 0.31 +1.2 652,665 + Psyr_0574 0.31 -1.2 652,666 - Psyr_0574 0.31 -0.4 652,666 - Psyr_0574 0.31 +1.7 652,695 + Psyr_0574 0.34 +1.2 652,762 - Psyr_0574 0.39 +1.2 653,064 - Psyr_0574 0.64 +0.2 653,123 + Psyr_0574 0.69 -1.2 653,192 + Psyr_0574 0.75 +1.2
Or see this region's nucleotide sequence