Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0499

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0497 and Psyr_0498 are separated by 2 nucleotidesPsyr_0498 and Psyr_0499 are separated by 9 nucleotidesPsyr_0499 and Psyr_0500 overlap by 4 nucleotides Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087 _0497 Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884 _0498 Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498 _0499 Psyr_0500: Psyr_0500 - biotin carboxyl carrier protein / biotin carboxylase, at 542,495 to 544,228 _0500 Position (kb) 540 541 542 543Strain fitness (log2 ratio) -2 -1 0 1 2at 540.228 kb on + strand, within Psyr_0498at 540.228 kb on + strand, within Psyr_0498at 540.229 kb on - strand, within Psyr_0498at 540.528 kb on + strand, within Psyr_0498at 540.528 kb on + strand, within Psyr_0498at 540.870 kb on + strandat 540.870 kb on + strandat 540.870 kb on + strandat 540.870 kb on + strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.873 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.882 kb on + strandat 540.882 kb on + strandat 540.882 kb on + strandat 540.883 kb on - strandat 540.883 kb on - strandat 540.903 kb on + strandat 541.149 kb on + strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.233 kb on + strand, within Psyr_0499at 541.234 kb on - strand, within Psyr_0499at 541.234 kb on - strand, within Psyr_0499at 541.234 kb on - strand, within Psyr_0499at 541.273 kb on - strand, within Psyr_0499at 541.370 kb on + strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.374 kb on + strand, within Psyr_0499at 541.569 kb on + strand, within Psyr_0499at 541.569 kb on + strand, within Psyr_0499at 541.570 kb on - strand, within Psyr_0499at 541.848 kb on + strand, within Psyr_0499at 541.849 kb on - strand, within Psyr_0499at 541.865 kb on - strand, within Psyr_0499at 541.917 kb on + strand, within Psyr_0499at 541.917 kb on + strand, within Psyr_0499at 541.918 kb on - strand, within Psyr_0499at 541.918 kb on - strand, within Psyr_0499at 541.918 kb on - strand, within Psyr_0499at 542.385 kb on + strandat 542.385 kb on + strandat 542.385 kb on + strandat 542.385 kb on + strandat 542.386 kb on - strandat 542.539 kb on + strandat 542.669 kb on + strand, within Psyr_0500at 542.669 kb on + strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.670 kb on - strand, within Psyr_0500at 542.854 kb on + strand, within Psyr_0500at 542.855 kb on - strand, within Psyr_0500at 542.855 kb on - strand, within Psyr_0500at 542.855 kb on - strand, within Psyr_0500at 543.227 kb on + strand, within Psyr_0500at 543.227 kb on + strand, within Psyr_0500at 543.228 kb on - strand, within Psyr_0500at 543.293 kb on + strand, within Psyr_0500at 543.294 kb on - strand, within Psyr_0500at 543.294 kb on - strand, within Psyr_0500

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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540,228 + Psyr_0498 0.17 -0.6
540,228 + Psyr_0498 0.17 +0.6
540,229 - Psyr_0498 0.17 +1.0
540,528 + Psyr_0498 0.55 +0.4
540,528 + Psyr_0498 0.55 -0.5
540,870 + -0.5
540,870 + +0.5
540,870 + +1.7
540,870 + +0.7
540,871 - +1.2
540,871 - +1.8
540,871 - -0.4
540,871 - +0.8
540,871 - +2.4
540,871 - -0.5
540,871 - -0.9
540,871 - +0.4
540,871 - +0.1
540,871 - -0.0
540,873 + -0.6
540,880 + +0.0
540,880 + -2.3
540,880 + +1.1
540,880 + +1.9
540,880 + +1.4
540,880 + -0.6
540,880 + -0.8
540,880 + +0.5
540,880 + -0.6
540,880 + -0.6
540,881 - +0.7
540,881 - -0.6
540,881 - +0.8
540,881 - +0.3
540,881 - +0.4
540,881 - -1.5
540,881 - -0.2
540,881 - -1.2
540,881 - -0.1
540,882 + -0.6
540,882 + -0.5
540,882 + +0.2
540,883 - -0.1
540,883 - -0.1
540,903 + +0.7
541,149 + Psyr_0499 0.16 +0.3
541,150 - Psyr_0499 0.16 -1.0
541,150 - Psyr_0499 0.16 +0.2
541,150 - Psyr_0499 0.16 -0.1
541,150 - Psyr_0499 0.16 -0.2
541,150 - Psyr_0499 0.16 -0.9
541,233 + Psyr_0499 0.21 +0.3
541,234 - Psyr_0499 0.21 +0.6
541,234 - Psyr_0499 0.21 -0.2
541,234 - Psyr_0499 0.21 +0.9
541,273 - Psyr_0499 0.24 -2.0
541,370 + Psyr_0499 0.30 -0.4
541,371 - Psyr_0499 0.30 -0.1
541,371 - Psyr_0499 0.30 -0.2
541,371 - Psyr_0499 0.30 -0.4
541,371 - Psyr_0499 0.30 +1.4
541,374 + Psyr_0499 0.30 -1.0
541,569 + Psyr_0499 0.42 +1.3
541,569 + Psyr_0499 0.42 -0.5
541,570 - Psyr_0499 0.42 -2.0
541,848 + Psyr_0499 0.59 +0.2
541,849 - Psyr_0499 0.60 -1.0
541,865 - Psyr_0499 0.60 -0.9
541,917 + Psyr_0499 0.64 -0.4
541,917 + Psyr_0499 0.64 +0.9
541,918 - Psyr_0499 0.64 -0.7
541,918 - Psyr_0499 0.64 +0.7
541,918 - Psyr_0499 0.64 -0.5
542,385 + +0.4
542,385 + -0.4
542,385 + +1.1
542,385 + +1.0
542,386 - +0.6
542,539 + -0.4
542,669 + Psyr_0500 0.10 -2.1
542,669 + Psyr_0500 0.10 +0.4
542,670 - Psyr_0500 0.10 +0.6
542,670 - Psyr_0500 0.10 +0.5
542,670 - Psyr_0500 0.10 +0.2
542,670 - Psyr_0500 0.10 +0.4
542,670 - Psyr_0500 0.10 +1.0
542,670 - Psyr_0500 0.10 +0.1
542,854 + Psyr_0500 0.21 -0.0
542,855 - Psyr_0500 0.21 -0.2
542,855 - Psyr_0500 0.21 -1.2
542,855 - Psyr_0500 0.21 +0.2
543,227 + Psyr_0500 0.42 +0.7
543,227 + Psyr_0500 0.42 -0.4
543,228 - Psyr_0500 0.42 +0.6
543,293 + Psyr_0500 0.46 +0.4
543,294 - Psyr_0500 0.46 -1.9
543,294 - Psyr_0500 0.46 +0.6

Or see this region's nucleotide sequence