Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5087

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
6,034,545	-		Psyr_5086	0.34	-0.2
6,034,550	+		Psyr_5086	0.35	-0.2
6,034,550	+		Psyr_5086	0.35	-0.2
6,034,550	+		Psyr_5086	0.35	+0.2
6,034,550	+		Psyr_5086	0.35	+0.5
6,034,550	+		Psyr_5086	0.35	-0.4
6,034,550	+		Psyr_5086	0.35	-0.1
6,034,551	-		Psyr_5086	0.35	+0.9
6,034,551	-		Psyr_5086	0.35	-0.1
6,034,551	-		Psyr_5086	0.35	+1.6
6,034,582	+		Psyr_5086	0.37	+0.1
6,034,583	-		Psyr_5086	0.37	+1.0
6,034,583	-		Psyr_5086	0.37	+1.2
6,034,664	+		Psyr_5086	0.44	+0.3
6,034,664	+		Psyr_5086	0.44	+1.2
6,034,665	-		Psyr_5086	0.44	-1.0
6,034,665	-		Psyr_5086	0.44	+0.1
6,034,665	-		Psyr_5086	0.44	+1.4
6,034,673	+		Psyr_5086	0.45	-0.9
6,034,673	+		Psyr_5086	0.45	+0.3
6,034,673	+		Psyr_5086	0.45	+0.5
6,034,673	+		Psyr_5086	0.45	+0.4
6,034,673	+		Psyr_5086	0.45	-0.2
6,034,673	+		Psyr_5086	0.45	-0.7
6,034,674	-		Psyr_5086	0.45	+1.1
6,034,674	-		Psyr_5086	0.45	-2.0
6,034,734	-		Psyr_5086	0.49	+1.3
6,034,734	-		Psyr_5086	0.49	+0.5
6,034,734	-		Psyr_5086	0.49	+2.2
6,034,734	-		Psyr_5086	0.49	-0.2
6,034,848	+		Psyr_5086	0.59	-0.1
6,034,937	+		Psyr_5086	0.66	+1.2
6,034,938	-		Psyr_5086	0.66	+0.4
6,035,067	+		Psyr_5086	0.76	+0.8
6,035,068	-		Psyr_5086	0.76	-1.1
6,035,068	-		Psyr_5086	0.76	-0.2
6,035,097	-		Psyr_5086	0.79	-1.1
6,035,097	-		Psyr_5086	0.79	-0.1
6,035,135	+		Psyr_5086	0.82	+2.7
6,035,135	+		Psyr_5086	0.82	+0.5
6,035,135	+		Psyr_5086	0.82	-0.1
6,035,135	+		Psyr_5086	0.82	+0.6
6,035,135	+		Psyr_5086	0.82	-0.5
6,035,135	+		Psyr_5086	0.82	+0.0
6,035,135	+		Psyr_5086	0.82	+0.3
6,035,135	+		Psyr_5086	0.82	-1.1
6,035,135	+		Psyr_5086	0.82	+1.3
6,035,135	+		Psyr_5086	0.82	-0.3
6,035,135	+		Psyr_5086	0.82	-0.7
6,035,135	+		Psyr_5086	0.82	+0.1
6,035,135	+		Psyr_5086	0.82	+0.0
6,035,136	-		Psyr_5086	0.82	-0.2
6,035,136	-		Psyr_5086	0.82	-0.2
6,035,136	-		Psyr_5086	0.82	-0.4
6,035,136	-		Psyr_5086	0.82	+0.0
6,035,136	-		Psyr_5086	0.82	+0.2
6,035,136	-		Psyr_5086	0.82	-1.1
6,035,136	-		Psyr_5086	0.82	+0.0
6,035,136	-		Psyr_5086	0.82	-0.2
6,035,136	-		Psyr_5086	0.82	+2.2
6,035,136	-		Psyr_5086	0.82	-0.0
6,035,136	-		Psyr_5086	0.82	-0.3
6,035,136	-		Psyr_5086	0.82	+0.4
6,035,136	-		Psyr_5086	0.82	+1.1
6,035,136	-		Psyr_5086	0.82	-1.0
6,035,136	-		Psyr_5086	0.82	-0.4
6,035,136	-		Psyr_5086	0.82	+0.6
6,035,136	-		Psyr_5086	0.82	-0.3
6,035,136	-		Psyr_5086	0.82	-1.4
6,035,136	-		Psyr_5086	0.82	-0.3
6,035,136	-		Psyr_5086	0.82	-0.0
6,035,136	-		Psyr_5086	0.82	-0.4
6,035,136	-		Psyr_5086	0.82	+0.1
6,035,136	-		Psyr_5086	0.82	-1.6
6,035,136	-		Psyr_5086	0.82	-0.5
6,035,195	-		Psyr_5086	0.87	+0.2
6,035,506	+				+0.3
6,035,583	+				+0.0
6,035,584	-				+1.2
6,035,646	+		Psyr_5087	0.10	+0.8
6,035,646	+		Psyr_5087	0.10	-0.4
6,035,646	+		Psyr_5087	0.10	-0.5
6,035,646	+		Psyr_5087	0.10	+0.1
6,035,646	+		Psyr_5087	0.10	-0.8
6,035,646	+		Psyr_5087	0.10	+0.5
6,035,647	-		Psyr_5087	0.10	+0.2
6,035,647	-		Psyr_5087	0.10	+0.6
6,035,740	-		Psyr_5087	0.15	-0.6
6,035,740	-		Psyr_5087	0.15	+0.0
6,035,796	+		Psyr_5087	0.18	-0.2
6,035,814	+		Psyr_5087	0.19	+0.8
6,035,815	-		Psyr_5087	0.19	+2.0
6,035,884	-		Psyr_5087	0.23	-0.8
6,035,884	-		Psyr_5087	0.23	+0.2
6,035,884	-		Psyr_5087	0.23	+0.8
6,035,989	+		Psyr_5087	0.28	+0.6
6,035,990	-		Psyr_5087	0.28	-0.7
6,036,025	-		Psyr_5087	0.30	+0.2
6,036,187	-		Psyr_5087	0.39	+0.1
6,036,294	+		Psyr_5087	0.45	+0.0
6,036,303	+		Psyr_5087	0.45	+0.7
6,036,303	+		Psyr_5087	0.45	-1.7
6,036,303	+		Psyr_5087	0.45	-0.1
6,036,304	-		Psyr_5087	0.45	+0.4
6,036,304	-		Psyr_5087	0.45	-0.1
6,036,304	-		Psyr_5087	0.45	-0.1
6,036,304	-		Psyr_5087	0.45	-0.3
6,036,304	-		Psyr_5087	0.45	+1.1
6,036,618	+		Psyr_5087	0.62	+0.3
6,036,770	+		Psyr_5087	0.70	+0.0
6,036,771	-		Psyr_5087	0.70	-0.2
6,036,771	-		Psyr_5087	0.70	+0.7
6,036,771	-		Psyr_5087	0.70	+0.3
6,036,771	-		Psyr_5087	0.70	+0.9
6,036,789	-		Psyr_5087	0.71	-0.8
6,036,799	-		Psyr_5087	0.71	+0.5
6,036,799	-		Psyr_5087	0.71	-2.0
6,036,799	-		Psyr_5087	0.71	-0.4
6,036,799	-		Psyr_5087	0.71	-0.3
6,036,851	+		Psyr_5087	0.74	-0.5
6,036,851	+		Psyr_5087	0.74	-1.4
6,036,851	+		Psyr_5087	0.74	-1.7
6,036,851	+		Psyr_5087	0.74	+0.8
6,036,852	-		Psyr_5087	0.74	-0.9
6,036,852	-		Psyr_5087	0.74	-1.1
6,036,852	-		Psyr_5087	0.74	-0.0
6,036,852	-		Psyr_5087	0.74	-0.7
6,036,852	-		Psyr_5087	0.74	-2.9
6,036,852	-		Psyr_5087	0.74	+0.1
6,036,852	-		Psyr_5087	0.74	-0.2
6,036,852	-		Psyr_5087	0.74	-0.7
6,036,879	+		Psyr_5087	0.76	+0.1
6,036,879	+		Psyr_5087	0.76	+0.2
6,036,879	+		Psyr_5087	0.76	-0.9
6,036,880	-		Psyr_5087	0.76	+0.2
6,037,014	-		Psyr_5087	0.83	+3.5
6,037,014	-		Psyr_5087	0.83	+0.8
6,037,228	+				+0.4
6,037,229	-				-0.8
6,037,229	-				+0.5
6,037,296	+				-0.0
6,037,296	+				+2.2
6,037,297	-				-0.9
6,037,297	-				-0.6
6,037,297	-				-0.8
6,037,311	+				-0.3
6,037,311	+				-0.7
6,037,311	+				+0.3
6,037,311	+				-0.7
6,037,311	+				-1.5
6,037,311	+				-1.0
6,037,311	+				-0.2
6,037,311	+				-1.2
6,037,311	+				-1.1
6,037,311	+				-0.1
6,037,311	+				+0.4
6,037,311	+				-0.3
6,037,311	+				+0.2
6,037,311	+				+0.0
6,037,311	+				+0.3
6,037,311	+				-0.6
6,037,311	+				-0.1
6,037,311	+				+0.2
6,037,311	+				-1.4
6,037,311	+				+0.2
6,037,312	-				+0.7
6,037,312	-				+0.3
6,037,312	-				-0.4
6,037,312	-				+1.2
6,037,312	-				+0.2
6,037,312	-				+0.1
6,037,312	-				-0.5
6,037,312	-				-0.2
6,037,312	-				-2.0
6,037,312	-				+1.1
6,037,312	-				-0.9
6,037,312	-				-0.5
6,037,312	-				+2.3
6,037,312	-				+0.7
6,037,312	-				-0.3
6,037,312	-				-0.7
6,037,312	-				+0.5
6,037,312	-				+1.4
6,037,312	-				-0.4
6,037,312	-				-0.5
6,037,315	+				-0.6
6,037,315	+				-2.1
6,037,315	+				-0.2
6,037,315	+				-0.1
6,037,315	+				+1.0
6,037,315	+				+0.1
6,037,315	+				-1.0
6,037,315	+				-0.1
6,037,315	+				-2.1
6,037,315	+				+0.9
6,037,315	+				-1.5
6,037,315	+				-0.1
6,037,315	+				+0.4
6,037,316	-				-0.2
6,037,316	-				+0.1
6,037,316	-				-1.4
6,037,316	-				-0.4
6,037,316	-				+0.3
6,037,316	-				+0.7
6,037,316	-				+0.9
6,037,316	-				+2.6
6,037,335	+				-1.3
6,037,335	+				+0.4
6,037,336	-				-0.7
6,037,420	+				-0.9
6,037,420	+				-0.2
6,037,420	+				-0.1
6,037,420	+				-1.2
6,037,420	+				+0.9
6,037,420	+				-0.9
6,037,420	+				-0.1
6,037,420	+				-0.5
6,037,420	+				-0.6
6,037,420	+				+0.5
6,037,420	+				-1.1
6,037,420	+				-0.4
6,037,420	+				-2.2
6,037,420	+				-0.3
6,037,421	-				-0.7
6,037,421	-				+0.2
6,037,421	-				+0.7
6,037,421	-				+2.8
6,037,421	-				+0.5
6,037,421	-				+0.5
6,037,421	-				+0.0
6,037,421	-				-0.2
6,037,421	-				-0.3
6,037,421	-				+1.0
6,037,421	-				-0.3
6,037,421	-				+0.8
6,037,421	-				-0.1
6,037,421	-				-1.6
6,037,421	-				-0.9
6,037,421	-				+0.1
6,037,421	-				+0.3
6,037,847	+		Psyr_5088	0.64	-0.0
6,037,847	+		Psyr_5088	0.64	-3.3
6,037,847	+		Psyr_5088	0.64	-2.1
6,037,847	+		Psyr_5088	0.64	-4.6
6,037,847	+		Psyr_5088	0.64	-3.3
6,037,847	+		Psyr_5088	0.64	-2.8
6,037,847	+		Psyr_5088	0.64	-4.3
6,037,847	+		Psyr_5088	0.64	-4.3
6,037,847	+		Psyr_5088	0.64	-3.1
6,037,847	+		Psyr_5088	0.64	-2.1
6,037,847	+		Psyr_5088	0.64	-3.4
6,037,847	+		Psyr_5088	0.64	-3.6
6,037,848	-		Psyr_5088	0.64	-4.0
6,037,848	-		Psyr_5088	0.64	-3.8
6,037,848	-		Psyr_5088	0.64	-2.3
6,037,848	-		Psyr_5088	0.64	-3.3
6,038,032	+				-4.7
6,038,032	+				-3.6
6,038,032	+				-4.7
6,038,032	+				-3.8
6,038,032	+				-3.8
6,038,032	+				-1.4
6,038,032	+				-4.0
6,038,032	+				-2.3
6,038,032	+				-4.4
6,038,033	-				-3.7
6,038,033	-				-2.2
6,038,033	-				-3.7
6,038,033	-				-3.0
6,038,033	-				-3.5
6,038,033	-				-3.4
6,038,033	-				-2.8
6,038,033	-				-4.0
6,038,033	-				-1.8
6,038,033	-				-4.9
6,038,033	-				-3.4
6,038,033	-				-2.0
6,038,098	+				-0.1
6,038,119	+				-5.0
6,038,119	+				-2.8
6,038,119	+				-1.7
6,038,120	-				-2.0
6,038,120	-				-3.0
6,038,120	-				-1.7
6,038,226	+		Psyr_5089	0.14	-2.9
6,038,227	-		Psyr_5089	0.14	-2.7
6,038,227	-		Psyr_5089	0.14	-3.1