Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2484

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2483 and Psyr_2484 overlap by 4 nucleotidesPsyr_2484 and Psyr_2485 overlap by 4 nucleotides Psyr_2483: Psyr_2483 - Acriflavin resistance protein, at 2,880,776 to 2,883,886 _2483 Psyr_2484: Psyr_2484 - Acriflavin resistance protein, at 2,883,883 to 2,886,990 _2484 Psyr_2485: Psyr_2485 - RND efflux system, outer membrane lipoprotein, NodT, at 2,886,987 to 2,888,450 _2485 Position (kb) 2883 2884 2885 2886 2887Strain fitness (log2 ratio) -2 -1 0 1 2at 2882.906 kb on + strand, within Psyr_2483at 2882.907 kb on - strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.011 kb on + strand, within Psyr_2483at 2883.012 kb on - strand, within Psyr_2483at 2883.012 kb on - strand, within Psyr_2483at 2883.012 kb on - strand, within Psyr_2483at 2883.012 kb on - strand, within Psyr_2483at 2883.012 kb on - strand, within Psyr_2483at 2883.012 kb on - strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strand, within Psyr_2483at 2883.383 kb on + strandat 2883.383 kb on + strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.384 kb on - strand, within Psyr_2483at 2883.405 kb on - strand, within Psyr_2483at 2883.413 kb on + strand, within Psyr_2483at 2883.413 kb on + strand, within Psyr_2483at 2883.413 kb on + strand, within Psyr_2483at 2883.413 kb on + strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.414 kb on - strand, within Psyr_2483at 2883.623 kb on + strandat 2883.624 kb on - strandat 2883.624 kb on - strandat 2883.806 kb on + strandat 2883.807 kb on - strandat 2883.807 kb on - strandat 2883.807 kb on - strandat 2883.812 kb on + strandat 2883.812 kb on + strandat 2883.813 kb on - strandat 2884.267 kb on + strand, within Psyr_2484at 2884.268 kb on - strand, within Psyr_2484at 2884.268 kb on - strand, within Psyr_2484at 2884.346 kb on - strand, within Psyr_2484at 2884.520 kb on + strand, within Psyr_2484at 2884.520 kb on + strand, within Psyr_2484at 2884.520 kb on + strand, within Psyr_2484at 2884.521 kb on - strand, within Psyr_2484at 2884.557 kb on + strand, within Psyr_2484at 2884.557 kb on + strand, within Psyr_2484at 2884.558 kb on - strand, within Psyr_2484at 2884.603 kb on + strand, within Psyr_2484at 2884.624 kb on + strand, within Psyr_2484at 2884.706 kb on - strand, within Psyr_2484at 2884.706 kb on - strand, within Psyr_2484at 2884.706 kb on - strand, within Psyr_2484at 2885.277 kb on + strand, within Psyr_2484at 2885.278 kb on - strand, within Psyr_2484at 2885.515 kb on + strand, within Psyr_2484at 2885.515 kb on + strand, within Psyr_2484at 2885.515 kb on + strand, within Psyr_2484at 2885.515 kb on + strand, within Psyr_2484at 2885.516 kb on - strand, within Psyr_2484at 2885.516 kb on - strand, within Psyr_2484at 2885.516 kb on - strand, within Psyr_2484at 2885.875 kb on + strand, within Psyr_2484at 2885.875 kb on + strand, within Psyr_2484at 2885.881 kb on + strand, within Psyr_2484at 2885.881 kb on + strand, within Psyr_2484at 2885.881 kb on + strand, within Psyr_2484at 2885.882 kb on - strand, within Psyr_2484at 2886.085 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.112 kb on + strand, within Psyr_2484at 2886.113 kb on - strand, within Psyr_2484at 2886.113 kb on - strand, within Psyr_2484at 2886.113 kb on - strand, within Psyr_2484at 2886.113 kb on - strand, within Psyr_2484at 2886.113 kb on - strand, within Psyr_2484at 2886.113 kb on - strand, within Psyr_2484at 2886.160 kb on + strand, within Psyr_2484at 2886.485 kb on - strand, within Psyr_2484at 2886.514 kb on + strand, within Psyr_2484at 2886.515 kb on - strand, within Psyr_2484at 2886.515 kb on - strand, within Psyr_2484at 2886.515 kb on - strand, within Psyr_2484at 2886.515 kb on - strand, within Psyr_2484at 2886.515 kb on - strand, within Psyr_2484at 2886.580 kb on + strand, within Psyr_2484at 2886.580 kb on + strand, within Psyr_2484at 2886.580 kb on + strand, within Psyr_2484at 2886.580 kb on + strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.581 kb on - strand, within Psyr_2484at 2886.584 kb on + strand, within Psyr_2484at 2886.584 kb on + strand, within Psyr_2484at 2886.584 kb on + strand, within Psyr_2484at 2886.585 kb on - strand, within Psyr_2484at 2886.585 kb on - strand, within Psyr_2484at 2886.889 kb on + strandat 2886.890 kb on - strandat 2886.890 kb on - strandat 2886.907 kb on + strandat 2886.913 kb on + strandat 2886.987 kb on - strandat 2887.093 kb on - strandat 2887.198 kb on - strand, within Psyr_2485at 2887.198 kb on - strand, within Psyr_2485at 2887.263 kb on + strand, within Psyr_2485at 2887.416 kb on + strand, within Psyr_2485at 2887.417 kb on - strand, within Psyr_2485at 2887.564 kb on - strand, within Psyr_2485at 2887.564 kb on - strand, within Psyr_2485at 2887.954 kb on - strand, within Psyr_2485

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,882,906 + Psyr_2483 0.68 +1.2
2,882,907 - Psyr_2483 0.68 -1.0
2,883,011 + Psyr_2483 0.72 -1.2
2,883,011 + Psyr_2483 0.72 -0.6
2,883,011 + Psyr_2483 0.72 +0.3
2,883,011 + Psyr_2483 0.72 +0.4
2,883,011 + Psyr_2483 0.72 +0.0
2,883,011 + Psyr_2483 0.72 -0.0
2,883,011 + Psyr_2483 0.72 -0.3
2,883,011 + Psyr_2483 0.72 -0.3
2,883,012 - Psyr_2483 0.72 -1.8
2,883,012 - Psyr_2483 0.72 -0.3
2,883,012 - Psyr_2483 0.72 +0.1
2,883,012 - Psyr_2483 0.72 +0.4
2,883,012 - Psyr_2483 0.72 -0.5
2,883,012 - Psyr_2483 0.72 +0.1
2,883,383 + Psyr_2483 0.84 -0.7
2,883,383 + Psyr_2483 0.84 -0.3
2,883,383 + Psyr_2483 0.84 +0.1
2,883,383 + Psyr_2483 0.84 +1.3
2,883,383 + Psyr_2483 0.84 +0.7
2,883,383 + Psyr_2483 0.84 -0.3
2,883,383 + Psyr_2483 0.84 +0.2
2,883,383 + -0.6
2,883,383 + Psyr_2483 0.84 -0.6
2,883,384 - Psyr_2483 0.84 +0.1
2,883,384 - Psyr_2483 0.84 -1.9
2,883,384 - Psyr_2483 0.84 -0.3
2,883,384 - Psyr_2483 0.84 -1.5
2,883,384 - Psyr_2483 0.84 +0.3
2,883,384 - Psyr_2483 0.84 +0.7
2,883,384 - Psyr_2483 0.84 -0.4
2,883,384 - Psyr_2483 0.84 +0.9
2,883,384 - Psyr_2483 0.84 +1.5
2,883,384 - Psyr_2483 0.84 -0.3
2,883,405 - Psyr_2483 0.85 -0.6
2,883,413 + Psyr_2483 0.85 -0.6
2,883,413 + Psyr_2483 0.85 +0.2
2,883,413 + Psyr_2483 0.85 -0.6
2,883,413 + Psyr_2483 0.85 -0.6
2,883,414 - Psyr_2483 0.85 +0.4
2,883,414 - Psyr_2483 0.85 +0.9
2,883,414 - Psyr_2483 0.85 -0.8
2,883,414 - Psyr_2483 0.85 -0.1
2,883,414 - Psyr_2483 0.85 +0.6
2,883,414 - Psyr_2483 0.85 -0.3
2,883,414 - Psyr_2483 0.85 +1.0
2,883,414 - Psyr_2483 0.85 -0.6
2,883,414 - Psyr_2483 0.85 +0.4
2,883,414 - Psyr_2483 0.85 -0.1
2,883,414 - Psyr_2483 0.85 +0.7
2,883,623 + -1.3
2,883,624 - -0.5
2,883,624 - +1.4
2,883,806 + +0.0
2,883,807 - +0.9
2,883,807 - -0.4
2,883,807 - +0.9
2,883,812 + -1.0
2,883,812 + -0.8
2,883,813 - +0.5
2,884,267 + Psyr_2484 0.12 -0.5
2,884,268 - Psyr_2484 0.12 +1.0
2,884,268 - Psyr_2484 0.12 +0.2
2,884,346 - Psyr_2484 0.15 +0.7
2,884,520 + Psyr_2484 0.20 +0.1
2,884,520 + Psyr_2484 0.20 +0.6
2,884,520 + Psyr_2484 0.20 -0.1
2,884,521 - Psyr_2484 0.21 +0.5
2,884,557 + Psyr_2484 0.22 +0.6
2,884,557 + Psyr_2484 0.22 +0.2
2,884,558 - Psyr_2484 0.22 -0.7
2,884,603 + Psyr_2484 0.23 +0.3
2,884,624 + Psyr_2484 0.24 +0.2
2,884,706 - Psyr_2484 0.26 -0.6
2,884,706 - Psyr_2484 0.26 +1.0
2,884,706 - Psyr_2484 0.26 +0.8
2,885,277 + Psyr_2484 0.45 -0.3
2,885,278 - Psyr_2484 0.45 +0.3
2,885,515 + Psyr_2484 0.53 -0.4
2,885,515 + Psyr_2484 0.53 +0.4
2,885,515 + Psyr_2484 0.53 +0.0
2,885,515 + Psyr_2484 0.53 -0.2
2,885,516 - Psyr_2484 0.53 +0.2
2,885,516 - Psyr_2484 0.53 +0.4
2,885,516 - Psyr_2484 0.53 +0.7
2,885,875 + Psyr_2484 0.64 -1.0
2,885,875 + Psyr_2484 0.64 +0.1
2,885,881 + Psyr_2484 0.64 -0.9
2,885,881 + Psyr_2484 0.64 -0.8
2,885,881 + Psyr_2484 0.64 -0.5
2,885,882 - Psyr_2484 0.64 -0.6
2,886,085 + Psyr_2484 0.71 +0.4
2,886,112 + Psyr_2484 0.72 -0.5
2,886,112 + Psyr_2484 0.72 -0.2
2,886,112 + Psyr_2484 0.72 +0.1
2,886,112 + Psyr_2484 0.72 -1.8
2,886,112 + Psyr_2484 0.72 -0.0
2,886,112 + Psyr_2484 0.72 -0.9
2,886,112 + Psyr_2484 0.72 +0.2
2,886,112 + Psyr_2484 0.72 -0.2
2,886,113 - Psyr_2484 0.72 +0.8
2,886,113 - Psyr_2484 0.72 -0.8
2,886,113 - Psyr_2484 0.72 +0.2
2,886,113 - Psyr_2484 0.72 +0.9
2,886,113 - Psyr_2484 0.72 +0.2
2,886,113 - Psyr_2484 0.72 +1.6
2,886,160 + Psyr_2484 0.73 -1.1
2,886,485 - Psyr_2484 0.84 -0.5
2,886,514 + Psyr_2484 0.85 +0.2
2,886,515 - Psyr_2484 0.85 +0.0
2,886,515 - Psyr_2484 0.85 -0.9
2,886,515 - Psyr_2484 0.85 +1.3
2,886,515 - Psyr_2484 0.85 +1.5
2,886,515 - Psyr_2484 0.85 +0.6
2,886,580 + Psyr_2484 0.87 -0.5
2,886,580 + Psyr_2484 0.87 -2.4
2,886,580 + Psyr_2484 0.87 +0.8
2,886,580 + Psyr_2484 0.87 -0.8
2,886,581 - Psyr_2484 0.87 +0.1
2,886,581 - Psyr_2484 0.87 -0.2
2,886,581 - Psyr_2484 0.87 -0.7
2,886,581 - Psyr_2484 0.87 -1.0
2,886,581 - Psyr_2484 0.87 +0.8
2,886,581 - Psyr_2484 0.87 -0.6
2,886,581 - Psyr_2484 0.87 +0.3
2,886,581 - Psyr_2484 0.87 -0.0
2,886,581 - Psyr_2484 0.87 -0.3
2,886,581 - Psyr_2484 0.87 -0.1
2,886,581 - Psyr_2484 0.87 -0.4
2,886,584 + Psyr_2484 0.87 -0.6
2,886,584 + Psyr_2484 0.87 +2.6
2,886,584 + Psyr_2484 0.87 +0.5
2,886,585 - Psyr_2484 0.87 +0.4
2,886,585 - Psyr_2484 0.87 -0.7
2,886,889 + -1.3
2,886,890 - -0.1
2,886,890 - +0.4
2,886,907 + +0.1
2,886,913 + +0.5
2,886,987 - +0.4
2,887,093 - +0.8
2,887,198 - Psyr_2485 0.14 +0.7
2,887,198 - Psyr_2485 0.14 -0.4
2,887,263 + Psyr_2485 0.19 -0.1
2,887,416 + Psyr_2485 0.29 +0.8
2,887,417 - Psyr_2485 0.29 +0.3
2,887,564 - Psyr_2485 0.39 -0.6
2,887,564 - Psyr_2485 0.39 -0.7
2,887,954 - Psyr_2485 0.66 +0.0

Or see this region's nucleotide sequence