Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0466 and Psyr_0467 are separated by 225 nucleotides Psyr_0467 and Psyr_0468 are separated by 173 nucleotides Psyr_0468 and Psyr_0469 are separated by 338 nucleotides
Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735
_0466
Psyr_0467: Psyr_0467 - Protein of unknown function UPF0153, at 505,961 to 506,416
_0467
Psyr_0468: Psyr_0468 - Aminotransferase, class I and II, at 506,590 to 507,798
_0468
Psyr_0469: Psyr_0469 - dihydroxyacid dehydratase, at 508,137 to 509,984
_0469
Position (kb)
506
507
508 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 505.740 kb on + strand at 505.788 kb on + strand at 505.789 kb on - strand at 506.037 kb on + strand, within Psyr_0467 at 506.037 kb on + strand, within Psyr_0467 at 506.037 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.136 kb on + strand, within Psyr_0467 at 506.137 kb on - strand, within Psyr_0467 at 506.194 kb on - strand, within Psyr_0467 at 506.358 kb on + strand, within Psyr_0467 at 506.358 kb on + strand, within Psyr_0467 at 506.359 kb on - strand, within Psyr_0467 at 506.359 kb on - strand, within Psyr_0467 at 506.786 kb on + strand, within Psyr_0468 at 506.786 kb on + strand, within Psyr_0468 at 506.787 kb on - strand, within Psyr_0468 at 506.787 kb on - strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.872 kb on + strand, within Psyr_0468 at 506.873 kb on - strand, within Psyr_0468 at 506.971 kb on - strand, within Psyr_0468 at 506.976 kb on - strand, within Psyr_0468 at 506.984 kb on + strand, within Psyr_0468 at 506.985 kb on - strand, within Psyr_0468 at 507.062 kb on + strand, within Psyr_0468 at 507.062 kb on + strand, within Psyr_0468 at 507.062 kb on + strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.147 kb on - strand, within Psyr_0468 at 507.191 kb on + strand, within Psyr_0468 at 507.192 kb on - strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.539 kb on + strand, within Psyr_0468 at 507.540 kb on - strand, within Psyr_0468 at 507.540 kb on - strand, within Psyr_0468 at 507.743 kb on + strand at 507.743 kb on + strand at 507.743 kb on + strand at 507.744 kb on - strand at 507.744 kb on - strand at 507.744 kb on - strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.803 kb on - strand at 507.811 kb on + strand at 507.815 kb on + strand at 507.815 kb on + strand at 507.816 kb on - strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.959 kb on + strand at 508.018 kb on - strand at 508.086 kb on + strand at 508.086 kb on + strand at 508.086 kb on + strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.116 kb on + strand at 508.411 kb on - strand, within Psyr_0469 at 508.411 kb on - strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.680 kb on + strand, within Psyr_0469 at 508.681 kb on - strand, within Psyr_0469
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 505,740 + +0.3 505,788 + -1.9 505,789 - -0.7 506,037 + Psyr_0467 0.17 +0.5 506,037 + Psyr_0467 0.17 +0.4 506,037 + Psyr_0467 0.17 -0.7 506,103 + Psyr_0467 0.31 -0.1 506,103 + Psyr_0467 0.31 +0.1 506,103 + Psyr_0467 0.31 -0.4 506,103 + Psyr_0467 0.31 -0.4 506,103 + Psyr_0467 0.31 +0.1 506,103 + Psyr_0467 0.31 -0.5 506,104 - Psyr_0467 0.31 +2.2 506,104 - Psyr_0467 0.31 -0.3 506,104 - Psyr_0467 0.31 +0.7 506,104 - Psyr_0467 0.31 +1.6 506,104 - Psyr_0467 0.31 +0.7 506,104 - Psyr_0467 0.31 +0.3 506,104 - Psyr_0467 0.31 -0.6 506,136 + Psyr_0467 0.38 +0.4 506,137 - Psyr_0467 0.39 +0.3 506,194 - Psyr_0467 0.51 -0.6 506,358 + Psyr_0467 0.87 -0.3 506,358 + Psyr_0467 0.87 +0.5 506,359 - Psyr_0467 0.87 -0.2 506,359 - Psyr_0467 0.87 -0.4 506,786 + Psyr_0468 0.16 +1.7 506,786 + Psyr_0468 0.16 +0.3 506,787 - Psyr_0468 0.16 -1.1 506,787 - Psyr_0468 0.16 -0.8 506,813 + Psyr_0468 0.18 -0.0 506,813 + Psyr_0468 0.18 -0.5 506,813 + Psyr_0468 0.18 -1.2 506,813 + Psyr_0468 0.18 +0.3 506,813 + Psyr_0468 0.18 -0.8 506,813 + Psyr_0468 0.18 +0.6 506,813 + Psyr_0468 0.18 -0.4 506,813 + Psyr_0468 0.18 +0.4 506,814 - Psyr_0468 0.19 +0.4 506,814 - Psyr_0468 0.19 -0.4 506,814 - Psyr_0468 0.19 -0.8 506,814 - Psyr_0468 0.19 -0.6 506,814 - Psyr_0468 0.19 -0.5 506,814 - Psyr_0468 0.19 -0.5 506,814 - Psyr_0468 0.19 +0.1 506,814 - Psyr_0468 0.19 -0.2 506,814 - Psyr_0468 0.19 -0.6 506,872 + Psyr_0468 0.23 -0.2 506,873 - Psyr_0468 0.23 -1.1 506,971 - Psyr_0468 0.32 +0.1 506,976 - Psyr_0468 0.32 -0.5 506,984 + Psyr_0468 0.33 +0.2 506,985 - Psyr_0468 0.33 +0.0 507,062 + Psyr_0468 0.39 -1.5 507,062 + Psyr_0468 0.39 -2.4 507,062 + Psyr_0468 0.39 -0.5 507,063 - Psyr_0468 0.39 -0.0 507,063 - Psyr_0468 0.39 +1.8 507,063 - Psyr_0468 0.39 +0.8 507,063 - Psyr_0468 0.39 +0.1 507,063 - Psyr_0468 0.39 -0.9 507,063 - Psyr_0468 0.39 -0.4 507,063 - Psyr_0468 0.39 -1.0 507,147 - Psyr_0468 0.46 -0.5 507,191 + Psyr_0468 0.50 +0.5 507,192 - Psyr_0468 0.50 +0.6 507,389 + Psyr_0468 0.66 -0.1 507,389 + Psyr_0468 0.66 -0.7 507,389 + Psyr_0468 0.66 +1.3 507,389 + Psyr_0468 0.66 +0.9 507,389 + Psyr_0468 0.66 +0.4 507,389 + Psyr_0468 0.66 -0.5 507,389 + Psyr_0468 0.66 -1.8 507,389 + Psyr_0468 0.66 +0.2 507,389 + Psyr_0468 0.66 -0.1 507,390 - Psyr_0468 0.66 -0.4 507,390 - Psyr_0468 0.66 -0.2 507,390 - Psyr_0468 0.66 -0.6 507,390 - Psyr_0468 0.66 -0.2 507,390 - Psyr_0468 0.66 -0.4 507,390 - Psyr_0468 0.66 -0.4 507,539 + Psyr_0468 0.78 -1.1 507,540 - Psyr_0468 0.79 -2.0 507,540 - Psyr_0468 0.79 +0.3 507,743 + +0.5 507,743 + -0.3 507,743 + +0.3 507,744 - +0.1 507,744 - +0.7 507,744 - +0.4 507,802 + +1.0 507,802 + -0.8 507,802 + -0.9 507,802 + +0.4 507,802 + -0.6 507,802 + -0.2 507,803 - -0.2 507,811 + -0.1 507,815 + -0.3 507,815 + +0.1 507,816 - +0.0 507,872 + -0.2 507,872 + -0.0 507,872 + -1.6 507,872 + +0.8 507,872 + +1.4 507,872 + +1.1 507,872 + +2.0 507,872 + +0.7 507,872 + +0.4 507,872 + +0.3 507,872 + +0.9 507,872 + -0.8 507,873 - +0.2 507,873 - -1.1 507,873 - -2.4 507,873 - -1.1 507,873 - +2.2 507,873 - -0.6 507,873 - +0.3 507,873 - +0.3 507,873 - +0.8 507,873 - -0.5 507,873 - -0.9 507,873 - +2.2 507,873 - -0.1 507,873 - +0.4 507,873 - -0.9 507,873 - -0.8 507,873 - -0.8 507,959 + +0.8 508,018 - +0.1 508,086 + -1.2 508,086 + +0.3 508,086 + +1.3 508,087 - +0.6 508,087 - -1.0 508,087 - +0.5 508,087 - +0.5 508,087 - +0.5 508,087 - -0.3 508,087 - -1.6 508,087 - +1.1 508,116 + -0.0 508,411 - Psyr_0469 0.15 -0.4 508,411 - Psyr_0469 0.15 +0.2 508,452 + Psyr_0469 0.17 +1.5 508,452 + Psyr_0469 0.17 -2.4 508,452 + Psyr_0469 0.17 +0.3 508,453 - Psyr_0469 0.17 -0.4 508,453 - Psyr_0469 0.17 +0.1 508,453 - Psyr_0469 0.17 -0.5 508,453 - Psyr_0469 0.17 -2.2 508,680 + Psyr_0469 0.29 -0.7 508,681 - Psyr_0469 0.29 +0.1
Or see this region's nucleotide sequence